Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq5 125 1e-23 seq4 122 1e-22 seq562 111 2e-19 seq201 93.3 6e-14 seq19 84.2 3e-11 >seq5 Length=3486096 Score = 125 bits (138), Expect = 1e-23 Identities = 213/309 (69%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 197613 TGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTTAAAGGCGATC 197672 |||| || ||| | || |||||||| ||||||| || || ||| ||||| || | Sbjct 3432909 TGAAGCAGTATTTAGATCTGATGCAGCACATTCTCGATGAAGGTGTGCATAAAGAAGACC 3432968 Query 197673 GTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGTAAAG 197732 | || || ||||||||||| || ||||| ||||||||||||||| || | | | Sbjct 3432969 GAACCGGCACAGGGACGCTCAGCGTGTTTGGCTATCAGATGCGTTTTGATCTGGCTCAGG 3433028 Query 197733 GTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGCTGT 197792 | || || || ||||| ||||| || ||| || || |||||||| ||||| ||||| | Sbjct 3433029 GGTTTCCATTGGTCACCACTAAAAAGTGCCATCTCCGCTCTATTATTCATGAGCTGCTTT 3433088 Query 197793 GGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATTTGGC 197852 |||| ||| || ||||| | | || || | ||||| ||||| | |||||| Sbjct 3433089 GGTTTCTTCAGGGCAGCACCAATATCGCCTACTTGAACGATAATGGCGTCAAGATTTGGG 3433148 Query 197853 GGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGGTGCACAATGGAGACGTT 197912 || ||| | |||| | || | |||||||| | ||||| | || ||| || | Sbjct 3433149 ATGATTGGGCAACTGAAGAAGGTGAGCTTGGCCCGGTATATGGGGAGCAGTGGCGATCCT 3433208 Query 197913 GGAAAGATG 197921 |||||| || Sbjct 3433209 GGAAAGGTG 3433217 >seq4 Length=3599618 Score = 122 bits (134), Expect = 1e-22 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 197666 GGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTG 197725 || || || || || || || || || || ||||| || |||||| || | ||| || Sbjct 201490 GGAGACCGCACGGGCACTGGCACACTCTCCGTCTTCGGTCGCCAGGCCCGCTACGATCTG 201549 Query 197726 CGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAA 197785 ||| | || || || | | || || ||||| || || || || || || ||||| || Sbjct 201550 CGTGAGGGATTTCCCTGCCTAACCACAAAGAAGCTTCATCTCCGCTCAATCATCCACGAG 201609 Query 197786 CTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACC 197845 |||||||||||||| | || || ||||||| || || ||| | || |||||||| ||| Sbjct 201610 CTGCTGTGGTTCCTCAAAGGTGACACCAACATCACCTACCTGAAGGAAAACGGCGTCACC 201669 Query 197846 ATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGGTGCACAATGG 197905 || ||| || ||| |||||||| ||| |||| |||||| | || || |||||| Sbjct 201670 ATCTGGGACGAATGGGCGGATGAAAACGGGGACCTCGGCCCCGTCTACGGGCGTCAATGG 201729 Query 197906 AG 197907 || Sbjct 201730 AG 201731 >seq562 Length=35438 Score = 111 bits (122), Expect = 2e-19 Identities = 126/167 (75%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 197732 GGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGCTG 197791 || |||||| | ||||| || || ||||| |||||||| || || || || || || ||| Sbjct 13008 GGCTTCCCGCTCGTCACCACGAAAAAACTGCACCTGCGCTCCATCATTCACGAGCTTCTG 13067 Query 197792 TGGTTCCTTAGT--GGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATTT 197849 ||||| || || || |||||||||| |||||| ||| |||| || || ||| | || | Sbjct 13068 TGGTT--TTTGTCCGGCGATACCAACATCAAATACCTGAAAGACAATGGTGTTTCGATCT 13125 Query 197850 GGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGGT 197896 || |||||| ||||||||||| ||||||| || | |||||| Sbjct 13126 GGGACGAGTGGGCGGATGAAAATGGCGACCTTGGGCCGGTCTATGGT 13172 >seq201 Length=246981 Score = 93.3 bits (102), Expect = 6e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 197732 GGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGCTG 197791 || ||||| | ||||| || |||||||| |||||| || || | || ||||||||| Sbjct 14281 GGCTTCCCCCTGGTCACAACCAAGAAACTGCACCTGAAATCCATCGTGCACGAACTGCTG 14222 Query 197792 TGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATTTGG 197851 |||||||| |||||||| |||| ||| ||||| | || ||||||||| | || ||| Sbjct 14221 TGGTTCCTCGCCGGGGATACGAACATCAAGTATCTCAAGGACAACGGCGTTTCGATCTGG 14162 Query 197852 CGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGGTGCACAATGG 197905 || ||| || ||||| || | || ||||| | || || | |||||| Sbjct 14161 GACGAATGGGCGGACGAAAACGGCGATCTGGGCCCGGTTTACGGGTCGCAATGG 14108 >seq19 Length=1029424 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 198329 CTTTCATGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATC 198388 ||||| || |||||||| || ||||| || || | ||||| |||||||||||||| || Sbjct 785155 CTTTCCTGCCAGCTCTACCAGCGCAGCGCCGACCTGTTCCTGGGCGTGCCGTTCAATATT 785096 Query 198389 GCGTCTTACGCATTACTCGTGCACATGGTTGCCCAGCAG 198427 || || ||||| | ||| ||||||| ||||||| ||| Sbjct 785095 GCCTCCTACGCTCTGCTCACGCACATGATTGCCCAACAG 785057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769186561878560