Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-17 seq9 87.8 1e-12 >seq1 Length=7344524 Score = 102 bits (112), Expect = 6e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 44111 AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA 44170 |||| ||| || | || || || |||| ||||||| ||||| || || |||||||| Sbjct 2683896 AATGGTTCCTTCGCTGAGCGCCTCATCGCCTTTGCAGCAGTGGAGGGTATCTTCTTTTCT 2683955 Query 44171 GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230 || ||||| | || || ||||| ||||| || ||||||||||| || ||| || Sbjct 2683956 GGTTCGTTCTGTTCGATCTTCTGGTTGAAGAAGCGTGGTTTGATGCCGGGTCTGAGCTTC 2684015 Query 44231 TCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || |||||||| || || |||||||| || | || || || ||||| || ||| Sbjct 2684016 TCTAATGAGTTGATCAGCCGTGATGAGGGTATGCACTGTGACTTTGCCTGTTTG 2684069 >seq9 Length=1386778 Score = 87.8 bits (96), Expect = 1e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 44156 GGCATTTTCTTTTC-AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||||||||||| || ||| | | ||| ||||| || ||| | ||||| || ||| |||| Sbjct 883809 GGCATTTTCTTCTCGGGGAGCTTCTGC-GCCATCTTCTGGCTCAAGAAGCGGGGTCTGAT 883867 Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTT 44274 ||| ||| |||||||||| || ||| | || || || ||||| ||| | || ||||| || Sbjct 883868 GCCCGGGCTGACGTTTTCGAACGAGATGATCAGCCGCGATGAGGGCCTGCACTGCGACTT 883927 Query 44275 TGCTTGC 44281 || ||| Sbjct 883928 CGCCTGC 883934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452454195660