Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1 104 7e-17 seq9 86.0 2e-11 seq337 84.2 7e-11 seq281 84.2 7e-11 >seq1 Length=7344524 Score = 104 bits (114), Expect = 7e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 443764 TCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTG 443823 || |||||||||||||| |||||||| | |||| ||||||| ||| ||| || || Sbjct 2683968 TCGATCTTCTGGTTGAAGAAGCGTGGTTTGATGCCGGGTCTGAGCTTCTCTAATGAGTTG 2684027 Query 443824 ATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATC 443883 ||||| || || |||||| |||| || ||||| |||||| | || |||| | |||||| Sbjct 2684028 ATCAGCCGTGATGAGGGTATGCACTGTGACTTTGCCTGTTTGCTGTACAATGATCACATC 2684087 Query 443884 GTGCACAAGCTGCCCAA 443900 | |||||||| || || Sbjct 2684088 ATCCACAAGCTACCAAA 2684104 >seq9 Length=1386778 Score = 86.0 bits (94), Expect = 2e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 443765 CCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGA 443824 ||||||||||| | || ||||| || || |||| ||| ||||| ||| ||||| ||| Sbjct 883837 CCATCTTCTGGCTCAAGAAGCGGGGTCTGATGCCCGGGCTGACGTTTTCGAACGAGATGA 883896 Query 443825 TCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCT 443869 |||| || || ||||| |||| |||||||||||||| | |||| Sbjct 883897 TCAGCCGCGATGAGGGCCTGCACTGCGACTTCGCCTGCCAGCTCT 883941 >seq337 Length=117279 Score = 84.2 bits (92), Expect = 7e-11 Identities = 77/96 (80%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 |||||||||| ||| || ||||| |||||||||||||||||||| ||||| || || Sbjct 25714 CACTTTTACGCCTGGAAGAAGGGCCTCAAGACGGGCATGTACTACCTTCGCACGCGCCCC 25773 Query 256595 GCGGCCGACCCGATCCAATTCACCGTAGCGCCAGAG 256630 ||||||| |||| || |||||||| | |||||| Sbjct 25774 AAGGCCGACGCGATTCAGTTCACCGTCG-ACCAGAG 25808 >seq281 Length=162485 Score = 84.2 bits (92), Expect = 7e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| |||| || ||||| |||||||| ||||||||||| |||||||| || Sbjct 73670 CACTTCTACGCGTGGAAGAAGGGCCTCAAGACGGGGATGTACTACCTCCGCACCCGCCCC 73611 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || |||||| | |||| |||||||| Sbjct 73610 GCCGCCGACGCCATCCCCTTCACCGT 73585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588321103393740