Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq493 1501 0.0 >seq493 Length=52014 Score = 1501 bits (1664), Expect = 0.0 Identities = 887/922 (96%), Gaps = 1/922 (0%) Strand=Plus/Plus Query 3687 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 3746 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 51093 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 51152 Query 3747 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 3806 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 51153 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 51212 Query 3807 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCGCAACAATGAGTGGCAGATAT 3866 | ||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| Sbjct 51213 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 51272 Query 3867 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCAATTTC 3926 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 51273 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 51332 Query 3927 TGATGCTGAATCAATGAGGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 3986 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 51333 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 51392 Query 3987 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 4046 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51393 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 51452 Query 4047 CATGTTCACCGTTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATGAGTC 4106 |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 51453 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 51512 Query 4107 GGTGTGAATCCCATTAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 4166 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51513 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 51572 Query 4167 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGC-TTTTTTGATTTCAGAATTAGCCTG 4225 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 51573 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTTTTTTTGATTTCAGAATTAGCCTG 51632 Query 4226 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 4285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51633 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 51692 Query 4286 GCAAGCATAAGCACACAGAATATGAAGCCTGCTGCCAGAAAAATGCATTCTGTTGTTGTC 4345 ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 51693 GCAAGCATAAGCACACAGAATATGAAGCCCGCTGCCAGAAAAATGCATTCCGTGGTTGTC 51752 Query 4346 ATGCCGGGTCTCTCTCGTTTGCTTCTGCTTTCGCCGCCATCATTTCCAGCTTTTGTGAAA 4405 || || ||| |||||| | |||||||||||||||| |||||||||||||||||||||||| Sbjct 51753 ATACCTGGTTTCTCTCATCTGCTTCTGCTTTCGCCACCATCATTTCCAGCTTTTGTGAAA 51812 Query 4406 GGGATGTGGCTAACGTATGAAATTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGA 4465 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51813 GGGATGCGGCTAACGTATGAAATTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGA 51872 Query 4466 CTCCAATTTGAGCGAGGCTATGTGCCATCCCGATACTCGTTCTTAATTCAACAGGAGATG 4525 |||||||||||| ||||||||||||||| |||||||||||||||| ||||||| ||||| Sbjct 51873 TTCCAATTTGAGCAAGGCTATGTGCCATCTCGATACTCGTTCTTAACTCAACAGAAGATG 51932 Query 4526 CTTTGTGCATACAGCCCCTCGTTTATTATTTATCTCTTCAGCCAGCCGCTGTGCTTTCAG 4585 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 51933 CTTTGTGCATACAGCCCCTCGTTTATTATTTATCTCCTCAGCCAGCCGCTGTGCTTTCAG 51992 Query 4586 TGGATTTCGGATAACAGAAAGG 4607 |||||||||||||||||||||| Sbjct 51993 TGGATTTCGGATAACAGAAAGG 52014 Score = 158 bits (174), Expect = 4e-34 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 3379 TGCTGCTCCCAGCTCAACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 3438 ||||| | | |||||||| | ||| ||||| || || |||||||| |||||||||||||| Sbjct 48137 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 48196 Query 3439 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 3495 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 48197 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 48253 Score = 158 bits (174), Expect = 4e-34 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 3379 TGCTGCTCCCAGCTCAACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 3438 ||||| | | |||||||| | ||| ||||| || || |||||||| |||||||||||||| Sbjct 50917 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 50976 Query 3439 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 3495 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 50977 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 51033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184443196713576