Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq310 383 4e-102 seq5 131 4e-26 seq19 96.9 9e-16 >seq310 Length=138217 Score = 383 bits (424), Expect = 4e-102 Identities = 950/1426 (67%), Gaps = 47/1426 (3%) Strand=Plus/Plus Query 24247 CACGATAGGGCGGCCCCATCCACCAACGCCTTTGATGGCAAACAGGCGGCGGCCTGTGCG 24306 ||||||||| |||||||| || ||||| || ||||| || | | ||| || | Sbjct 46815 CACGATAGGACGGCCCCAGCCGCCAACACCCTTGATCGCCCAGACTTTGCGTCC----CA 46870 Query 24307 GCCTCTTGCG----TAGTCGTATGCGGCCTGCGTGTAACCGCTGGTGCCCCCGGTATCGA 24362 ||| |||||| ||||| || || ||||| ||| |||| || |||||||||| Sbjct 46871 GCCGCTTGCGCGCGTAGTCATAGGCCGCCTGGGTGCGCCCGCCCTCACCGCCGGTATCGA 46930 Query 24363 GGCAGGCGGCCATGATCGGCATGATGGCCCCGGTTTCGTGCTGGTAGGTTTCCGCCAGCA 24422 |||| || || |||| ||| ||| ||| | ||||| || | || || | ||||| Sbjct 46931 GGCACGCCGCAGAGATCCGCAACTCGGCACCGCTCTCGTGTTGCCATGTCTCAGACAGCA 46990 Query 24423 GGTCATCCAGCGCATCCCAGGGGTCTGGCGTCAGCGGGTCGCCCCACAGGACGTGGTAAC 24482 | | ||||| | ||||| || | ||| || |||||||| || | |||| Sbjct 46991 GAGCGTCCAGTTCGTCCCATACATCCTGTTGCAGAGGATCGCCCCAGAGCGTCTTGTAAT 47050 Query 24483 CCAATGACCAGGATTCTTCACCCACGCCCCAGGCCACAACCTCACATTCCAGGCGGTCAA 24542 | | ||||||||||| || |||| |||||||| || | || || || |||||| Sbjct 47051 CGACAGACCAGGATTCCTCTCCCAGCCCCCAGGCAACGATTTCCACCTCGAGCCGGTCAT 47110 Query 24543 CCTGCATGTCTATGCCTGCGGTGA-TATACAGACCACCAGCAGGCACCTGCGCGGCGTAT 24601 ||||||||| || || || |||| || | || ||| | |||||| |||| ||| || Sbjct 47111 TCTGCATGTCGATCCCGGCAGTGAGTACGCCTGCCCCCATC-GGCACCGGCGCCGCGAAT 47169 Query 24602 TCCTCGCGGC--GCGCCATCAGTGAATCCGGGTCAACCTTGTCGCCTTCTTCTTCCCATG 24659 | ||| ||| ||||||||| || || | ||||||||| ||||||||||||| Sbjct 47170 T--TCGTGGCACGCGCCATCAAGACCGACGCCTCGAGCTTGTCGCCCTCTTCTTCCCATG 47227 Query 24660 TGCGCGCCAGGCTGACGTTGGTGAAGGTTTGCAGGTCGTCCGTTTTCAGC----TTGTCC 24715 | | |||||| ||||| |||||||||||||| ||| |||| ||||| Sbjct 47228 TCTGGGCCAGGGACACGTTCACAAAGGTTTGCAGGTCTCCCG----CAGCCCTTTTGTCG 47283 Query 24716 AGGTAGTCACGCACGATGGCCGGTACTTTACGGAATGTGCTGTATAGTTCGTTCAGGTGG 24775 ||| || |||| || || | || || | || || || ||| || Sbjct 47284 AGGAAGGATTGCACAATATCCTCGAGCCGCCGAAAGCAGGAATACAGCTCAGACAGATGA 47343 Query 24776 TAGCTGGCGTGACCTTCAAACGGCCTGGATGCCTTCCATCCTGCGCCCTTTTCTTCGGCC 24835 ||| || |||||| ||||||| | | || |||| || |||||| || || Sbjct 47344 TAGGACGCATGACCTCGAAACGGCTTCGTCGCAATCCAGCCACCGCCCTCGCGCTCTGCA 47403 Query 24836 TGGCGGATAGCCGCTATCCGTTCGCCGTCATTCCACTGCGCGCCGCATGATGGGCAATAC 24895 | |||||| ||||| || |||||||| ||||| | |||||| | | || Sbjct 47404 TTGCGGATCGCCGCGCAGCGCTCGCCGTCGCTCCACACAGTGCCGCA-----GCCGTCAC 47458 Query 24896 AGGTGCGCTGTTTCCGGCTTCTGTTCGTCGATGGCCGCCAGCGTTTCCGCGTCAGTTTCG 24955 || || | | | | | | | |||| ||| | | | | ||| || || || | Sbjct 47459 CGGCGCACAGATAGCCGGATGT-TTCGGCGAGGTGCAC-ACCGT-----CGGCATCTTTG 47511 Query 24956 CGCTGGCCATCCCATTTGACGTTTTCCCATTCAAGCGTAACGTGATCGTCACAGTGCGGG 25015 | ||| || || || ||| || || | | | | | || |||||| Sbjct 47512 ----GACCAAGTCACCTG-CGA----CCAGTCCAGTTTTTGCAGGTGGCCGCAATGCGGG 47562 Query 25016 CAGCAAACATAGAAGTGTCGCTGGTCGCCCATTTCATACGCTTTTTCGATGTACGATTCC 25075 || | |||||||| | |||||||||||| ||| | || |||||||| | | | || Sbjct 47563 CACCGCACATAGAAATACCGCTGGTCGCCCTGATCAAAGGCCTTTTCGATCCA-GCTGCC 47621 Query 25076 -CCCTTAAGGGTAGGGGTGCTGATTTCCAGCAAAAACCGTTGGTCACCGAAGGTGGCAGA 25134 ||||| | || || ||||||||||||||||||| ||| || || || ||||| || | Sbjct 47622 GCCCTTGATCGTCGGCGTGCTGATTTCCAGCAAAAGCCGCTGATCGCCAAAGGTCGCGGC 47681 Query 25135 ACGCTGCCACAGCAGGCCAACCGGGTGACCTTCGCTGGTTCGTTCATATCCGTCTACCTC 25194 |||||||||| |||||| |||||||| || || |||| || ||||| ||||| ||| Sbjct 47682 CCGCTGCCACAACAGGCCGACCGGGTGGCCCTCATTGGTCCGGTCATAGCCGTCCGTCTC 47741 Query 25195 GTCACATACGATCAGCGGCGCTGAACGACCGCGCATGGTCTTTGGCGAACCGGACCATGC 25254 ||||| ||||| | |||||||| | || |||||||| || ||||| || ||||| Sbjct 47742 ATCACAGACGATAAATGGCGCTGACCTGCCCCGCATGGTTTTGGGCGATCCAGACCAGCT 47801 Query 25255 GAACATCAGGAACCCGCCAGGGTATGATTTCATTTTCTGGTTGTTCACCCCGTCGCGGCC 25314 |||||||| ||||||||| ||||| |||||| ||| ||||| || || | || | Sbjct 47802 GAACATCATGAACCCGCCGGGGTAGCTCTTCATTCGCTGATTGTTGACGCCATGCCGCGC 47861 Query 25315 ACGCGGTTTGGCAATGGCGTTGTTTACCGGCGCGCATTCTTCCGCCAGCGGGTTGAATTT 25374 || || ||||||| | | | | || ||| || |||||||||||||||| Sbjct 47862 CCGGGGCTTGGCAAGCACTTCGGCCAAGCCATCGTTTTCCTCGACCAGCGGGTTGAATTT 47921 Query 25375 TGTTTCCAGCCAGGTGCGCAAGTCATCCTGGCTTGGCTGCATCATCATCT-GGCTGCGCG 25433 || || ||||| || ||| || ||||||| |||||||||||||| | || || | Sbjct 47922 GGTCTCGAGCCACGTCGTCAAATCGCCCTGGCTGGGCTGCATCATCATTTGGGAAACGGG 47981 Query 25434 GTTCAGCGGCTACGCTGTACGCCTGCACGCACAGTGCCAGCATGGTTTTGCCCACCTGTG 25493 | | | | | | ||||||| || || || | || ||||| ||||| | Sbjct 47982 ACTGAAC-CCGATCCGAAACGCCTGTGCGGCAAGCGCGGTCTGCGTCTTGCCAACCTGCG 48040 Query 25494 CGCCCCACATCAGCGTTACGCGGTAGCAATCCGGGTCAACCAGCATGTCCATTGGTTCGC 25553 |||||||||| |||| | || | ||| ||| || || |||||| || ||||| Sbjct 48041 CGCCCCACATGAGCGAGATCCGATTGCAGCGCGGATCTGCCGTCATGTCGATGACTTCGC 48100 Query 25554 GCTGGTATGGCGCGTTATCCAGGCGCAGCGGCCCTGGCACGGCGTTGCCAGACGGAATGC 25613 |||| || ||||||||||| | |||| ||| || ||||| || ||||| ||||| Sbjct 48101 GCTGATACGGCGCGTTATCGAACCGCATCGGTCCCGGCACCGCATTGCCGATGGGAATTT 48160 Query 25614 GGATGTTTGCCTGCGCCCACTCTGACGGCTTCATGTCTGGCGGCGG 25659 ||| || | |||||||| |||||||| | ||| || ||||| Sbjct 48161 TGATATTCTGTTCGGCCCACTCCGACGGCTTTAGGTCAGGTGGCGG 48206 Score = 145 bits (160), Expect = 2e-30 Identities = 287/425 (68%), Gaps = 6/425 (1%) Strand=Plus/Plus Query 9971 ATGCGTGAAGCCAGGCACGCACAGAATGCGAGGCGAGTAGCCCACAACGGATTCAGCGCC 10030 |||||| | || ||| |||| || ||||| |||| | || || || ||| || || Sbjct 34068 ATGCGTCCAACCCGGCGCGCAGAGGATGCGCGGCGCATGTCCGACGACACTTTCGGCACC 34127 Query 10031 AAGCAGTGCGTGAACGCCTTCATATTTGCCGGTTGATGCGTTAACGCCACCCATGATGTT 10090 | ||| ||||||||||| || | ||||| || || || || || ||||| || Sbjct 34128 GACCAGCGCGTGAACGCCCTCGAGCTGCCCGGTATTCGCATTCACACCGCCAATGATATT 34187 Query 10091 GGCCAGTGTTGCTGCTTCGTCTTCGCCTTCTTCAACACGCACAACGATGACCACAGCGCC 10150 || || ||| | | ||||| | || ||||| || || ||| ||| || |||||||| Sbjct 34188 TGCAAGGGTTTCGCCCTCGTCCGCCCCCTCTTCGACGCGGACACAGATCACGACAGCGCC 34247 Query 10151 GATCTGGTCAAGGATGGCATCCAGTGCTTTTGGCAGTGTGCCTTCACCGGTGCCAAGCA- 10209 ||| || | |||| |||| || || |||| ||||| | |||||||| | Sbjct 34248 CGCCTGATCCATGATGCCATCGAGCGCGCCAGGCAACGTGCCGCCCCCGGTGCCGTCCTC 34307 Query 10210 -----TGTCCAGTTTTGCCGCTTCGCGCTGGCTGCCAGCAATCAGGGTAGGGGTGTTAAT 10264 ||||||| |||||| ||||| |||| || || ||||| || |||| | Sbjct 34308 GGTCGTGTCCAGACGTGCCGCCTCGCGACGGCTCCCGGCGATCAGAACCGGAGTGTCGAA 34367 Query 10265 CGGGAATGCGTCAGGGTCGGCATTCGGCGCTGTGCCTACAATGCCAATGACGCTGGATTT 10324 || || || || | ||| || ||||||| |||||||||||||||||||||| || | Sbjct 34368 AGGAAAGGCATCGGCGTCCGCGCTCGGCGCGGTGCCTACAATGCCAATGACGCCGGTGCT 34427 Query 10325 AACGGTTTGAATGACGCGTGAACCGGAATCAATTTCCAGCACCTCCACGCCATGTAAGAA 10384 | ||| | || ||| | ||| || || || || ||||| || ||||| || | || Sbjct 34428 GATGGTGCGGATCGGGCGCGGACCCGAGTCGATCTCAAGCACTTCGACGCCGTGGAGAAA 34487 Query 10385 ATCAG 10389 | ||| Sbjct 34488 ACCAG 34492 >seq5 Length=3486096 Score = 131 bits (144), Expect = 4e-26 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 41199 GGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATC 41258 |||| ||| ||||||| || | || ||||| |||||||| ||||||| || || Sbjct 756286 GGCAGCGACCCAGAAACAAAGTATTTACCCAGCGGAAGCGCGGTTACTAATCTCAGTATT 756345 Query 41259 GCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGG 41318 || || | |||| ||||| || || |||||| || || | || | || |||||| Sbjct 756346 GCTACCTCCGAAACATGGAAAGACAAGCAGACCGGCCAGCAGCAGGAGCGTACTGAATGG 756405 Query 41319 CACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGGT 41378 ||||| ||||| ||||| | ||||| || || || ||||||||||| |||||| Sbjct 756406 CACCGTGTTGTGTTCTTCAATCGTCTGGCTGAGATCGCCGGCGAATACCTGAAAAAAGGT 756465 Query 41379 AGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGTT 41438 |||||||| | || || || || ||||||| |||||||| | |||| |||| Sbjct 756466 AGCAAGGTCTATATAGAGGGTGCGTTGAGAACGCGCAAATGGCAAGGTCAGGATGGCCAG 756525 Query 41439 GATCGCTACACCACTGAAAT 41458 ||||| |||||||| || || Sbjct 756526 GATCGTTACACCACAGAGAT 756545 >seq19 Length=1029424 Score = 96.9 bits (106), Expect = 9e-16 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 41308 AAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACC 41367 |||| ||||||||||| |||||||| ||||| ||| | || ||| | || || | || | Sbjct 986787 AAACCGAATGGCACCGGGTTGTCATGTTCGGCAAGATCGCCGAAGTGGCCGGCCAGTATC 986728 Query 41368 TGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACC 41427 ||||||| || ||||| | |||||| |||| |||| ||||| ||||||||| || Sbjct 986727 TGCGCAAGGGCTCGAAGGTCTACATTGAGGGCAAGCTGCAGACGCGCAAATGGCAGAACA 986668 Query 41428 AGGCTGGCGTTGATCGCTACACCACTGA 41455 ||| || ||| ||||||||| || Sbjct 986667 AGGAAGGTCAGGATGTCTACACCACCGA 986640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133208442075552