Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq198 105 5e-18 seq19 87.8 1e-12 >seq198 Length=250510 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 29968 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 30027 |||||| || | |||| |||||| || || || |||||||| ||||||||| | | Sbjct 63963 CGTGAGCAGCGCGTAGGAGGCGATATTGAAAGGCACCCCGAGACCCATGTCCGCGCTGCG 64022 Query 30028 CTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCA 30087 |||||| | ||| || || ||||| || || |||||||||||| || | |||||| Sbjct 64023 CTGGTACATCTGGCAGGACAGCTCCCCCTCCGCCACGTAAAACTGGCAGAACATGTGGCA 64082 Query 30088 CGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCT 30147 ||| || || ||||| ||| | ||| ||||||||||| | | | ||| | || Sbjct 64083 CGGGGGGAGGGCCATCTTGCCGAGGTCCGACGGGTTCCAGGCAGAGAGTACGATTCTCCG 64142 Query 30148 GTCTTCTGGGTTGTTCCT 30165 ||| || |||||| |||| Sbjct 64143 GTCCTCCGGGTTGGTCCT 64160 Score = 104 bits (114), Expect = 2e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 ||||| || |||||| |||||| |||||| || |||||| ||||| || || || || Sbjct 64664 AGCTGGTCGACCCCCTTCCCCGTGTAGTCGGCGTGCATGTCGGTGTATTCGGCGCCAAAG 64723 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307 ||||||||||| || |||||||||||||| ||||| || || ||||| | | || |||| Sbjct 64724 TGCCTCCACTGAAAGCCGTACACCGGTCCGAGGTCGCCTTCCTCCCTCTCCGTGAGGCCC 64783 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 30320 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAG 30379 || ||||| || ||||| |||||||||| | | |||| | || |||| | || | | Sbjct 65172 AACTCTCTCGATCCGTTCCCGTCCCAGATGTGGATCCCCCTGTCCTTGAGCACGTTTGCG 65231 Query 30380 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30439 || ||| | || || |||||||||||||||||| ||||| | ||| || || | | Sbjct 65232 TTGGTGCAGCCGGAAACAAACCACAGCAGCTCCTCCGCGACGCCGCGCCAGAACACGCGC 65291 Query 30440 TTGGTCGTGAGGAG-GGGA--AACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAAC 30496 ||||| ||||| || |||| | || || | |||| | | | ||| || ||| Sbjct 65292 TTGGTGGTGAGCAGCGGGAAGAGCTCCTCCCTCAGGCTGAAGCGCATCTGCACGCCGAAC 65351 Query 30497 ACGGACAAGACTCCCGTGCCCGTCCTGTCTCCCCTGCGTTTACCGTTTTCCAAGACGT 30554 ||||| | ||||| || || | ||| |||||||| |||||||||| || || Sbjct 65352 TTGGACAGGGTCCCCGTCCCGGTGCGGTCCCCCCTGCGCACGCCGTTTTCCAGGATGT 65409 >seq19 Length=1029424 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013 || || ||||||| |||||| |||| |||| ||| || || || || || || || | Sbjct 785061 TGGGCAATCATGTGCGTGAGCAGAGCGTAGGAGGCAATATTGAACGGCACGCCCAGGAAC 785120 Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30073 | ||| | | |||||||||||| || || ||| ||||||| |||||| ||||| Sbjct 785121 AGGTCGGCGCTGCGCTGGTAGAGCTGGCAGGAAAGCCTTCCGTCGGCCACGTAGAACTGG 785180 Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCC 30109 ||| | |||||| || | ||||||||| ||||| Sbjct 785181 AACAGGCAGTGGCAAGGCGCCAGAGCCATGCGGCCC 785216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406306775203344