Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq493 295 3e-75 >seq493 Length=52014 Score = 295 bits (326), Expect = 3e-75 Identities = 184/198 (93%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 9884 TTTCCAGTTCTGCTATGTGCTTACTTCCATCCGAGATAACGCCCTCGTAATACTCACGCT 9943 ||||||||| || || ||||||| |||||||||||||| || |||||||||||||||| Sbjct 48058 TTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATACTCACGCT 48117 Query 9944 GCTCGTTGAGTTTTGATTTTGCTGCTTCAAGCTCAACGCGCAGCTTCCCTACCGTTAGCG 10003 |||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||||| Sbjct 48118 GCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCG 48177 Query 10004 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 10063 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48178 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 48237 Query 10064 CCAGCAGTGCCAGCGCAA 10081 |||||||| ||||| ||| Sbjct 48238 CCAGCAGTTCCAGCACAA 48255 Score = 295 bits (326), Expect = 3e-75 Identities = 184/198 (93%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 9884 TTTCCAGTTCTGCTATGTGCTTACTTCCATCCGAGATAACGCCCTCGTAATACTCACGCT 9943 ||||||||| || || ||||||| |||||||||||||| || |||||||||||||||| Sbjct 50838 TTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATACTCACGCT 50897 Query 9944 GCTCGTTGAGTTTTGATTTTGCTGCTTCAAGCTCAACGCGCAGCTTCCCTACCGTTAGCG 10003 |||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||||| Sbjct 50898 GCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCG 50957 Query 10004 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 10063 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50958 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 51017 Query 10064 CCAGCAGTGCCAGCGCAA 10081 |||||||| ||||| ||| Sbjct 51018 CCAGCAGTTCCAGCACAA 51035 Score = 86.0 bits (94), Expect = 3e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 7479 CGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTGCGAGGATTCTTAT 7530 ||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 47276 CGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGTGCGAGGATTGTTAT 47327 Score = 86.0 bits (94), Expect = 3e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 7479 CGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTGCGAGGATTCTTAT 7530 ||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 50056 CGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGTGCGAGGATTGTTAT 50107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210929318230032