Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq5 181 4e-41 seq19 147 9e-31 seq642 87.8 7e-13 seq413 84.2 9e-12 seq2 84.2 9e-12 >seq5 Length=3486096 Score = 181 bits (200), Expect = 4e-41 Identities = 216/293 (74%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 7277 GAGGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACA 7336 ||||||| |||||||||||||| || ||||| ||| | ||||| ||||| || Sbjct 756251 GAGGTGTAAACAAAGTCATTCTAGTGGGTAATTGCGGCAGCGACCCAGAAACAAAGTATT 756310 Query 7337 TGCCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACA 7396 | |||| ||| | ||||| || || ||| | || ||| ||| | ||||| |||| Sbjct 756311 TACCCAGCGGAAGCGCGGTTACTAATCTCAGTATTGCTACCTCCGAAACATGGAAAGACA 756370 Query 7397 AGCAGACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCC 7456 |||||||||||||||| ||||| || | || | ||||| || ||||||||| ||| | Sbjct 756371 AGCAGACCGGCCAGCAGCAGGAGCGTACTGAATGGCACCGTGTTGTGTTCTTCAATCGTC 756430 Query 7457 TGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCC 7516 |||| |||||||||||||| |||||| || ||| | ||||||| | || || Sbjct 756431 TGGCTGAGATCGCCGGCGAATACCTGAAAAAAGGTAGCAAGGTCTATATAGAGGGTGCGT 756490 Query 7517 TGCGCACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAG 7569 || | || ||||| ||||| | |||||| |||||||| || |||||||| ||| Sbjct 756491 TGAGAACGCGCAAATGGCAAGGTCAGGATGGCCAGGATCGTTACACCACAGAG 756543 >seq19 Length=1029424 Score = 147 bits (162), Expect = 9e-31 Identities = 233/332 (70%), Gaps = 8/332 (2%) Strand=Plus/Minus Query 7277 GAGGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACA 7336 |||| || |||||||| |||||| | |||||| | || |||||||| |||||||||| Sbjct 986931 GAGGCGTAAACAAAGTAATTCTGATCGGTAACCTGGGACAGGACCCGGATACCCGCTACA 986872 Query 7337 TGCCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACA 7396 || ||||| ||||| || ||| | | || || || ||| |||| ||||| Sbjct 986871 CCCCTAACGGTAATGCCGTTGTGAACCTGAATCTGGCAACAGACGAAAGCTACAAGGATC 986812 Query 7397 AGCAGACCGGCCAGCAACAGGAACGCG----CCGAGTTCCACCGCGTGGTGTTCTTCGGT 7452 |||||||| |||| || | || |||| | ||||| || || | ||||| Sbjct 986811 GTCAGACCGG---GCAATTGGTGC-CGAAAACCGAATGGCACCGGGTTGTCATGTTCGGC 986756 Query 7453 CGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGC 7512 | || || | |||||| |||| ||||||||||| || |||||||| | || ||| Sbjct 986755 AAGATCGCCGAAGTGGCCGGCCAGTATCTGCGCAAGGGCTCGAAGGTCTACATTGAGGGC 986696 Query 7513 AGCCTGCGCACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTA 7572 | |||| || ||||| |||||| |||| || ||||| |||||||||||||| Sbjct 986695 AAGCTGCAGACGCGCAAATGGCAGAACAAGGAAGGTCAGGATGTCTACACCACCGAGGTT 986636 Query 7573 ATCGTCGACATGCACGGACAGATGCAGATGCT 7604 | || || || |||| |||||||||||||| Sbjct 986635 GTGGTGGATATCAACGGCCAGATGCAGATGCT 986604 >seq642 Length=18206 Score = 87.8 bits (96), Expect = 7e-13 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 52602 CGCCGATCTTGTCGGCCATGGTCAGCAGTTCGGCATCGCTATCCGCGAACATGTGGCACA 52661 ||||||||| ||| ||||| | |||||||| | |||||| || |||||||||||| Sbjct 11882 CGCCGATCTGGTCTGCCATTGCAAGCAGTTCTTCCAGGCTATCGGCCCACATGTGGCACA 11823 Query 52662 TCTTCATGCGGCCATAGGTTGCGTTCATGTTGTCGACGTAAACAGCCATCACTCGACCCT 52721 | |||| || || | | || | ||||||||| |||||||||||||| || | |||| Sbjct 11822 TGATCATTCGCCCGAAAGAGGCCTGCATGTTGTCAACGTAAACAGCCATGACCAGCCCCT 11763 Query 52722 C 52722 | Sbjct 11762 C 11762 >seq413 Length=79672 Score = 84.2 bits (92), Expect = 9e-12 Identities = 149/217 (69%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 7364 TCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAACGCG 7423 ||| | | || || |||||||||||||||||| | || ||| ||| |||| || | Sbjct 31647 TCAGCGTTGCGACAAGCGAGAGCTGGAAGGACCGCAACACTGGCGAGCGCAAGGAGCGTG 31588 Query 7424 CCGAGTTCCACCGCGTGG---TGTTCTTCGGTCGCCTGGCGGAGATCGCCGGCGAGTACC 7480 ||||| ||| ||| ||||| | | | |||| | |||| | |||| | Sbjct 31587 TCGAGTGGCACAACGTCTCCCTGTTCGCAGAGCCCGCGGCGAACTTCGCAGAACAGTATC 31528 Query 7481 TGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGCACCCGCAAGTGGCAGGCTC 7540 |||| ||||| || |||| ||| | |||||| || |||||||||||||||| || Sbjct 31527 TGCGTAAGGGCTCGAAGGTTTACATTGAAGGCCAGCTCGAAACCCGCAAGTGGCAGGATC 31468 Query 7541 AGGACGGCCAGGACCGATACACCACCGAGGTAATCGT 7577 | | || ||||| || |||||||| || || |||| Sbjct 31467 AAGCAGGGCAGGATCGCTACACCACAGAAGTCGTCGT 31431 >seq2 Length=6328565 Score = 84.2 bits (92), Expect = 9e-12 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 7481 TGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGCACCCGCAAGTGGCAGGCTC 7540 ||||||| || ||| ||||||| |||||||| ||| |||||||| ||||||| || Sbjct 2916185 TGCGCAAAGGCTCCAAGGTCTATCTCGAAGGCCAGTTGCAGACCCGCAAATGGCAGGATC 2916244 Query 7541 AGGACGGCCAGGACCGATACACCACCGAGGT 7571 || |||||||||||| ||| ||||||| || Sbjct 2916245 AGTCCGGCCAGGACCGTTACTCCACCGAAGT 2916275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194817506534104