Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq318 755 0.0 seq60 641 5e-179 >seq318 Length=132058 Score = 755 bits (836), Expect = 0.0 Identities = 743/954 (78%), Gaps = 14/954 (1%) Strand=Plus/Minus Query 176149 TACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTT 176208 ||| | |||||||| ||||| || ||||| || ||| | ||||| | | |||||| Sbjct 95102 TACATCGGTTGGTTCGGTGTTCTTATGATCCCTACTCTATTAACTGCAACTTC-TGTTTT 95044 Query 176209 -ATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGC 176267 || | || ||||| || || || || || || ||||| ||||| || || || ||| | Sbjct 95043 CATTATCGCTTTTATCGCTGCTCCTCCAGTGGACATCGATGGTATCCGTGAGCCTGTATC 94984 Query 176268 AGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGC 176327 || ||||| || || ||||||||||||||||| || || || || |||| || ||||| Sbjct 94983 TGGTTCTCTTCTTTACGGAAACAACATCATCTCTGGTGCTGTTGTACCAACTTCTAACGC 94924 Query 176328 AATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAA 176387 ||||| ||||||||||||||||| |||||||| || | |||| |||||||| ||||| Sbjct 94923 GATCGGTCTACACTTCTACCCAATTTGGGAAGCTGCTTCTCTTGATGAATGGCTTTACAA 94864 Query 176388 TGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGG 176447 || || || |||||||| | || | ||||||| | | || |||| | |||||||| Sbjct 94863 CGGTGGTCCTTACCAACTAATCGTTTGCCACTTCTTCCTTGGAATCTGCTCATACATGGG 94804 Query 176448 ACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTC 176507 || ||||||||||| || | | |||| ||||||||||||||| ||| || ||||| Sbjct 94803 TCGTGAATGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTC 94744 Query 176508 TGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTT 176567 ||||||||| | || || | || || ||| || |||| ||| |||||||||| ||||| Sbjct 94743 TGCACCAGTTGCAGCTGCTACTGCTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTT 94684 Query 176568 CTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGC 176627 ||| ||||||||||||||||| || || |||||||||||||| ||| | ||||||||||| Sbjct 94683 CTCAGATGGTATGCCTCTTGGTATCTCTGGTACATTCAACTTCATGATCGTATTCCAAGC 94624 Query 176628 AGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGG 176687 ||||||||||| || |||||||||||||| ||||| || || || ||||| || ||||| Sbjct 94623 TGAGCACAACATCCTTATGCACCCATTCCACATGCTAGGTGTTGCTGGTGTTTTCGGTGG 94564 Query 176688 ATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAAC 176747 || | ||||| || |||||||| || |||||||| || || | | || || || Sbjct 94563 TTCATTGTTCTCTGCTATGCACGGTTCACTAGTTACTTCATCTCTAATCCGTGAAACTAC 94504 Query 176748 CGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACAT 176807 || ||||||||| ||| |||||||| ||||| || |||||||| || |||||||| Sbjct 94503 TGAGAACGAATCAGCTAACGCTGGTTACAAGTTCGGTCAGGAAGAAGAAACTTACAACAT 94444 Query 176808 TGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTC 176867 ||||||||| |||||||||||||||||||| |||||||| || ||||||||||| ||||| Sbjct 94443 TGTAGCTGCTCACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTC 94384 Query 176868 AAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAAT 176927 | ||||||||||||||| || || | |||||| | | || ||||||||||| | Sbjct 94383 TCGTTCTCTTCACTTCTTCCTAGCTGCTTGGCCAGTTATCGGTATTTGGTTTACTGCTCT 94324 Query 176928 GGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG- 176986 ||| ||| || |||||||||||||| ||||| |||||||||||||| || || | | Sbjct 94323 TGGTATTTCTACTATGGCATTCAACCTAAACGGATTCAACTTCAACCAATCAGTAGTTGA 94264 Query 176987 ---ACAACTCTGGTAAAGTGATTCCTACA--TGGGGAGATATCCTTAACCGTGCAAACCT 177041 |||| || | ||| | | ||| ||||| ||||| | |||||||| ||||| Sbjct 94263 TTCACAA----GG--ACGTGTTATCAACACTTGGGGTGATATTATCAACCGTGCTAACCT 94210 Query 177042 TGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGC 177095 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 94209 TGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCACTTGACCTTGC 94156 >seq60 Length=599436 Score = 641 bits (710), Expect = 5e-179 Identities = 706/937 (75%), Gaps = 2/937 (0%) Strand=Plus/Minus Query 176149 TACGTTGGTTGGTTTGGTGTGCTCATGATTCC-ATGTCTGCTCACTGCTGCAGCATGTTT 176207 ||| |||||||||||||| | ||||| || | || | | || || || | |||| Sbjct 100560 TACATTGGTTGGTTTGGTTGTTTAATGATCCCTACGT-TATTAACAGCAGCTTCTTGTTA 100502 Query 176208 TATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGC 176267 ||| | || ||||| ||||| || ||||| ||||| || ||||| || || || ||||| Sbjct 100501 CATCATCGCTTTTATCGCAGCTCCGCCTGTAGATATTGATGGTATCCGTGAGCCTGTAGC 100442 Query 176268 AGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGC 176327 |||||| || | || || |||||||||||| || || || | || || |||||||| Sbjct 100441 TGGATCTTTATTATACGGTAACAACATCATCAGTGGTGCTGTTATACCTAGTTCAAACGC 100382 Query 176328 AATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAA 176387 |||||| | |||||||||||||| |||||||| || || |||| || ||| | ||||| Sbjct 100381 AATCGGTATTCACTTCTACCCAATTTGGGAAGCTGCTTCAATTGAAGAGTGGTTATACAA 100322 Query 176388 TGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGG 176447 || || || |||||| | | |||||||| ||| | || ||| | | || ||||| Sbjct 100321 CGGTGGTCCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGTTGCTTGTTGGATGGG 100262 Query 176448 ACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTC 176507 || ||||||||||||| ||| | |||| |||||||||||||| | || |||| ||| Sbjct 100261 TCGTGAATGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATTTTCGTAGCATTCTC 100202 Query 176508 TGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTT 176567 ||| |||||| | ||||| ||||| ||| | || || || |||||||||| ||| Sbjct 100201 TGCTCCAGTAGCAGCAGCATCTGCAGTATTCTTAGTTTACCCTATCGGTCAAGGTAGTTT 100142 Query 176568 CTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGC 176627 ||||||||||||||| | || ||||| ||||| || ||||| ||| | || |||||||| Sbjct 100141 CTCTGATGGTATGCCATTAGGTATTTCTGGTACGTTTAACTTCATGATCGTTTTCCAAGC 100082 Query 176628 AGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGG 176687 || || |||||| |||||||||||||||||||| ||| || || ||||| || ||||| Sbjct 100081 TGAACATAACATTTTAATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTTTTCGGTGG 100022 Query 176688 ATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAAC 176747 || | ||| || ||||||||| | | || ||||| | || | || |||| Sbjct 100021 TTCATTATTCAGTGCTATGCACGGATCTTTAGTAACTTCAAGTTTAATTCGTGAAACAAG 99962 Query 176748 CGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACAT 176807 |||| ||||| |||||||||||||||||||||||||||||||| || |||||||| Sbjct 99961 CGAAGTTGAATCTGTTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACAT 99902 Query 176808 TGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTC 176867 |||||||| || ||||||||||||||| | || ||||| |||||| |||||| ||||| Sbjct 99901 CGTAGCTGCTCATGGTTACTTTGGTCGTTTAATTTTCCAATATGCTAGTTTCAACAACTC 99842 Query 176868 AAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAAT 176927 ||| | | || |||||||||||||||| || || ||| | || ||||| || || | Sbjct 99841 TAGAGCTTTACATTTCTTCCTTGCAGCATGGCCTGTAGTTGGGATTTGGTTAACAGCTTT 99782 Query 176928 GGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGA 176987 ||||| | || |||||||||||| | |||||||| ||||||||||| ||||| | || Sbjct 99781 AGGTGTAAGTACTATGGCATTCAACTTAAACGGTTTTAACTTCAACCAATCTGTTGTTGA 99722 Query 176988 CAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTAT 177047 | ||| || || ||||||| || ||| ||||||||||| | | ||||| Sbjct 99721 TAGTGAAGGTCGTGTTATAAACACATGGGCTGACATCATTAACCGTGCAGATTTAGGTAT 99662 Query 177048 GGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCA 177084 |||||| |||||||| ||||| ||||| ||||||||| Sbjct 99661 GGAAGTAATGCACGAACGTAACGCTCATAACTTCCCA 99625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603488878026240