Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028676.1 Length=149218 Score E Sequences producing significant alignments: (Bits) Value seq556 113 4e-20 seq2 89.7 5e-13 >seq556 Length=36347 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 112689 AGATAGGTGTCCAGGATAGCTTCCTGTTCCATGCGTTCATCAGCATCCTGTCGACGAAGA 112748 ||||| || || || | ||||| || ||||| || || | |||| | ||||| | Sbjct 10111 AGATAAGTATCAAGCACGGCTTCTTGCTCCATACGCTCGTTTTGATCCAATTTACGAATA 10052 Query 112749 GCAATGACCTTTCGGAGAATCTTCGTGTCGAAGCCCATCGACTTTGCTTCTCCGAAGACG 112808 | || || || || | || ||| || ||| | ||||| | |||||||| || | || Sbjct 10051 GAAACAACTTTGCGCAAAACCTTGGTATCGTAACCCATAGCTTTTGCTTCGCCATATACA 9992 Query 112809 TCCTTGATGTCATCGCCGATTGTCCGCTTCTCTTCTTCGAGGCGTTCGATACGCTCGATG 112868 || |||||||| || ||||||| ||||||||||| ||||| || || ||||||||| Sbjct 9991 TCTTTGATGTCGTCTGCGATTGTTTTTTTCTCTTCTTCAAGGCGCTCAATGCGCTCGATG 9932 Query 112869 AAAGCTCTCAGCTGATCGCGTGCTACTCCG 112898 || ||||| || |||| || ||||| ||| Sbjct 9931 AATGCTCTTAGTTGATTGCTGGCTACGCCG 9902 >seq2 Length=6328565 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 112673 CATGCCGAGAGCCTGGAGATAGGTGTCCAGGATAGCTTCCTGTTCCATGCGTTCAT-CAG 112731 ||||||||| || || |||||| ||||| | |||||| | || ||| |||| | | Sbjct 5455890 CATGCCGAGCGCGTGAAGATAGAGATCCAGAACAGCTTCTTCCTCTTCGCGCTCATGCGG 5455949 Query 112732 CATCCTGTCGACGAAGAGCAATGACCTTTCGGAGAATCTTCGTGTCGAAGCCCATCGACT 112791 | | | | | || || | |||||| || | ||| ||| ||| |||| || || Sbjct 5455950 CTGCTTCTTG-CGCAGGCTGACGACCTTGCGCAAAATTTTCACGTCATAGCC-ATTTCCT 5456007 Query 112792 TTG-CTTCTCCGAAGACGTCCTTGATGTCATCGCCGATTGTCCGCTTCTCTTCTTCGAGG 112850 ||| |||| | |||| ||||||||||| ||| | || | || |||||||| ||| Sbjct 5456008 TTGGCTTCCGCATAGACATCCTTGATGTCGTCGGCAATGACCTTTTTTTCTTCTTCCAGG 5456067 Query 112851 CGTTCGATACGCTCGATGAAAGCTCTCAGCTGATCGCGTGCTACTCC 112897 || || || ||||||||||| || | ||||||||| ||| ||||| Sbjct 5456068 CGCTCAATGCGCTCGATGAATGCCCGCAGCTGATCTGCTGCCACTCC 5456114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477365232068160