Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028677.1 Length=46596 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 7e-12 seq19 80.6 8e-11 >seq5 Length=3486096 Score = 84.2 bits (92), Expect = 7e-12 Identities = 71/84 (85%), Gaps = 4/84 (5%) Strand=Plus/Plus Query 1700 TAGGGCACGTAGCTCAATTGGATAGAGCCCCGGTCTCCAAAGCCGGTGGTTGGGGGTTCG 1759 |||| || |||| |||||||| |||||| ||||||||||| ||| |||||||||||| Sbjct 711211 TAGGCCA-GTAGTTCAATTGG-TAGAGCGTCGGTCTCCAAAACCGAAAGTTGGGGGTTCG 711268 Query 1760 AGTCCCTCCGGGCCTGCAACAGAA 1783 ||||||||| ||||||| ||||| Sbjct 711269 AGTCCCTCCTGGCCTGC--CAGAA 711290 >seq19 Length=1029424 Score = 80.6 bits (88), Expect = 8e-11 Identities = 60/69 (87%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 1708 GTAGCTCAATTGGATAGAGCCCCGGTCTCCAAAGCCGGTGGTTGGGGGTTCGAGTCCCTC 1767 ||||||||||||| ||||| ||||||||||| ||| |||||||||||||| |||||| Sbjct 1022412 GTAGCTCAATTGGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGATTCCCTC 1022354 Query 1768 CGGGCCTGC 1776 | ||||||| Sbjct 1022353 CTGGCCTGC 1022345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148984304942672