Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq493 168 3e-37 >seq493 Length=52014 Score = 168 bits (186), Expect = 3e-37 Identities = 176/226 (78%), Gaps = 14/226 (6%) Strand=Plus/Plus Query 7560 TCAAGCTCAACACGCAGCTTTCCTACCGTTAGCGCAATCTCCTCGTTCTCCTGGTCGCGC 7619 ||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||| Sbjct 50924 TCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGG 50983 Query 7620 TGTTTAATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCACAACCTGAGGT 7679 |||| ||||||||||||||||||||| |||||||||||||| ||||||||| | ||| Sbjct 50984 CGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCACAATCGATGGT 51043 Query 7680 GTGGC--TTTCATACGAAATGCCAG---CAATTTTTGAGGCGT--TGCTACTGTTTCAAT 7732 || | ||||| ||| | | | ||| | || ||| ||| | || Sbjct 51044 GTTACCAATTCATGGAAAAGGTCTGCGTCAAATCCCCAGTCGTCATGC-ATTG-----CC 51097 Query 7733 TGCTACTGCCGCCTCACGCAGTGCCTGGTAATTAATTTTGCTCACT 7778 |||| ||||||| |||||||||||||| | ||||||| ||||||| Sbjct 51098 TGCT-CTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACT 51142 Score = 161 bits (178), Expect = 4e-35 Identities = 103/112 (92%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 7560 TCAAGCTCAACACGCAGCTTTCCTACCGTTAGCGCAATCTCCTCGTTCTCCTGGTCGCGC 7619 ||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||| Sbjct 48144 TCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGG 48203 Query 7620 TGTTTAATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCACAA 7671 |||| ||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 48204 CGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCACAA 48255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200996606843024