Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028701.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq493 187 5e-43 >seq493 Length=52014 Score = 187 bits (206), Expect = 5e-43 Identities = 201/266 (76%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 13019 CCGTGGCCGTCTGACACCATCCCTGCCGGTTACGCCCTGATGCAGGGGCAAACATTTGAT 13078 |||||||| || || | | | || | || |||| ||||||||||||||| | ||||| Sbjct 32853 CCGTGGCCATCAGATATCGTTCCGTCTGGCTACGTCCTGATGCAGGGGCAGGCGTTTGAC 32912 Query 13079 AAATCTGCTTACCCGTTACTGGCTATAGCATATCCGTCCGGCGTTATTCCGGATCTGCGA 13138 ||||| || ||||| ||| ||| | || ||||| || || || |||| ||| ||||| Sbjct 32913 AAATCAGCCTACCCAAAACTTGCTGTCGCGTATCCATCGGGTGTGCTTCCTGATATGCGA 32972 Query 13139 GGCTGGATAATCAAAGGCAAGCCCGCGAGCGGGCGCGCTGTGCTCTCTCAGGAGCTGGAT 13198 ||||||| |||||| || || ||||| ||||| || ||||| | |||||||| | |||| Sbjct 32973 GGCTGGACAATCAAGGGGAAACCCGCCAGCGGTCGTGCTGTATTGTCTCAGGAACAGGAT 33032 Query 13199 GGCAACAAATCGCACAGTCACAGCGCCAGAGCGCAGGATACCGATCTGGGAACGAAAGGT 13258 || | || ||||||| ||||| ||||| || | ||| ||| |||| |||||| Sbjct 33033 GGAATTAAGTCGCACACCCACAGTGCCAGTGCATCCGGTACGGATTTGGGGACGAAAACC 33092 Query 13259 ACGTCGTCATTTGATTACGGAACGAA 13284 || ||||| ||||||||||| ||||| Sbjct 33093 ACATCGTCGTTTGATTACGGGACGAA 33118 Score = 187 bits (206), Expect = 5e-43 Identities = 201/266 (76%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 13019 CCGTGGCCGTCTGACACCATCCCTGCCGGTTACGCCCTGATGCAGGGGCAAACATTTGAT 13078 |||||||| || || | | | || | || |||| ||||||||||||||| | ||||| Sbjct 36987 CCGTGGCCATCAGATATCGTTCCGTCTGGCTACGTCCTGATGCAGGGGCAGGCGTTTGAC 37046 Query 13079 AAATCTGCTTACCCGTTACTGGCTATAGCATATCCGTCCGGCGTTATTCCGGATCTGCGA 13138 ||||| || ||||| ||| ||| | || ||||| || || || |||| ||| ||||| Sbjct 37047 AAATCAGCCTACCCAAAACTTGCTGTCGCGTATCCATCGGGTGTGCTTCCTGATATGCGA 37106 Query 13139 GGCTGGATAATCAAAGGCAAGCCCGCGAGCGGGCGCGCTGTGCTCTCTCAGGAGCTGGAT 13198 ||||||| |||||| || || ||||| ||||| || ||||| | |||||||| | |||| Sbjct 37107 GGCTGGACAATCAAGGGGAAACCCGCCAGCGGTCGTGCTGTATTGTCTCAGGAACAGGAT 37166 Query 13199 GGCAACAAATCGCACAGTCACAGCGCCAGAGCGCAGGATACCGATCTGGGAACGAAAGGT 13258 || | || ||||||| ||||| ||||| || | ||| ||| |||| |||||| Sbjct 37167 GGAATTAAGTCGCACACCCACAGTGCCAGTGCATCCGGTACGGATTTGGGGACGAAAACC 37226 Query 13259 ACGTCGTCATTTGATTACGGAACGAA 13284 || ||||| ||||||||||| ||||| Sbjct 37227 ACATCGTCGTTTGATTACGGGACGAA 37252 Score = 176 bits (194), Expect = 1e-39 Identities = 364/542 (67%), Gaps = 0/542 (0%) Strand=Plus/Plus Query 14362 AATGACGTTTAAAATGAGTGAGCAGGCACAGACAATTAAAATTTATAATCTGCGTTCAGA 14421 |||| | || | ||||||||| || ||| ||| || |||||||||||||||| | | Sbjct 37702 AATGGCATTCAGAATGAGTGAACAACCACGGACCATAAAAATTTATAATCTGCTGGCCGG 37761 Query 14422 TACGAATGAATTTATTGGGGCAGGTGATGCGTATATACCGCCACACACGGGATTACCGGC 14481 || |||||||||||||| | |||||| || ||||| ||||| || || || | || || Sbjct 37762 AACTAATGAATTTATTGGTGAAGGTGACGCATATATTCCGCCTCATACCGGTCTGCCTGC 37821 Query 14482 AAACTGTACGGATATTGCACCCCCTGATATTCCCGCCAGTCATATTGCGGTATTTGACGC 14541 |||| |||| ||||||||||| || |||||||| || | | | || || || || Sbjct 37822 AAACAGTACCGATATTGCACCGCCAGATATTCCGGCTGGCTTTGTGGCTGTTTTCAACAG 37881 Query 14542 TGAAACCGAAACGTGGAGTCTGCATGAGGACCACCGTGGCGAGACGGTTTACGACACAAC 14601 ||| | | ||||| ||| ||| ||||| || || | || || || ||| | Sbjct 37882 TGATGAGGCATCGTGGCATCTCGTTGAAGACCATCGGGGTAAAACCGTCTATGACGTGGC 37941 Query 14602 AACCGGCAATCAGGTTTATATCTCCGCTCCCGGCCCGCTACCTGAAAACGTCACATCAGT 14661 ||||| | | | | ||| || | | ||| ||| |||| ||||| | || | | Sbjct 37942 TTCCGGCGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATTTTACCTGGTT 38001 Query 14662 TTCACCTGATGGTGAATATCAGAAATGGGATGGTAAGACGTGGGTAAAAGACGAAGCGGC 14721 || || | || ||||||||||| ||| | || | | ||||| || || | || Sbjct 38002 ATCGCCGGGAGGGGAATATCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGC 38061 Query 14722 TGAAACAGCGACCAGACTTCGTGAAGCTGAAGGAACCAAAAGCCGTCTTTTGCAAACAGC 14781 |||| | | | | | || || || |||| ||| |||| | || |||| ||| Sbjct 38062 AGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAAAAGCCTGATGCAGGTAGC 38121 Query 14782 AGCGGAGAAAATCGCGCCGTTACAGGATGCTGTTGATCTTGGAATCGCAACAGATGATGA 14841 ||| | || |||||| | |||||||||| ||||| | ||| ||||| | || || Sbjct 38122 CAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGAAGGAAGA 38181 Query 14842 GAAAGCGCAACTCGACGAGTGGAAAAAATACAGGGTGTTGGTAAACCGGGTGGATACATC 14901 | || || || | ||||| || || |||||||| | ||||| || |||||||| Sbjct 38182 AACCTCGTTGCTGGAAGCCTGGAAGAAGTATCGGGTGTTGCTGAACCGTGTTGATACATC 38241 Query 14902 AA 14903 || Sbjct 38242 AA 38243 Score = 87.8 bits (96), Expect = 4e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 13476 TCACGGTGGACGCAGACGGTAATGCGGAAACCACAGTTAAAAACATTGCATTTAACTATA 13535 |||| || |||| | ||||| ||||||| ||| || |||||||||||||||||||||| Sbjct 37627 TCACCGTTAACGCTGCGGGTAACGCGGAAAACACCGTCAAAAACATTGCATTTAACTATA 37686 Query 13536 TTGTGAGGCTGGCATGAT 13553 |||||||||| |||| || Sbjct 37687 TTGTGAGGCTTGCATAAT 37704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107106268970664