Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028768.1 Length=49714 Score E Sequences producing significant alignments: (Bits) Value seq3 100 9e-17 seq2 84.2 7e-12 seq1 84.2 7e-12 >seq3 Length=4400433 Score = 100 bits (110), Expect = 9e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 36080 CTGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACC 36139 |||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 3749079 CTGGTCGGAGCGATAGGATTCGAACCTACGACCCTCTGGTCCCAAACCAGATGCGCTACC 3749138 Query 36140 TGACTGCGCTACACTCCG 36157 |||||||| || ||||| Sbjct 3749139 AGACTGCGCCACGCTCCG 3749156 >seq2 Length=6328565 Score = 84.2 bits (92), Expect = 7e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140 ||||||| | | | ||||||||| | ||||||||| ||||||| ||||||||||||| Sbjct 2781911 TGGTCGGGGCAGCAAGATTCGAACTTGCGACCCTCTGGTCCCAAACCAGATGCGCTACCA 2781852 Query 36141 GACTGCGCTACACTCCGAAGGTGCCG 36166 | |||||||| || |||| |||| || Sbjct 2781851 GGCTGCGCTATACCCCGACGGTGACG 2781826 >seq1 Length=7344524 Score = 84.2 bits (92), Expect = 7e-12 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 36083 GTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTG 36141 ||||| || ||||||||||||| | ||| ||||||||||||||| |||||| ||| | Sbjct 7232152 GTCGGGGTGGCAGGATTCGAACCTGCGGCCCCCTGCTCCCAAAGCAGGTGCGCTAACCGG 7232211 Query 36142 ACTGCGCTACACTCCGAA 36159 |||||||||||| ||||| Sbjct 7232212 ACTGCGCTACACCCCGAA 7232229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158961818212384