Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq2 107 7e-19 seq4 95.1 5e-15 >seq2 Length=6328565 Score = 107 bits (118), Expect = 7e-19 Identities = 142/194 (73%), Gaps = 5/194 (3%) Strand=Plus/Plus Query 32690 CCTGATCGTG---GACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGACCTGCTGTC 32746 |||||||||| ||||| | |||||||||||| ||| | | || | || ||||||| Sbjct 5308310 CCTGATCGTGATCGACGAATGCTCCATGGTGGATGAGGAACTCGGTAAGGATTTGCTGTC 5308369 Query 32747 CTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTCATGGGGGC 32806 |||||| |||| |||| | ||||||||||| |||||||||||||| |||| || | Sbjct 5308370 CTTCGGAACGCCGGTCCTTGTGCTGGGCGACCCGGCCCAGCTGCCGCCTGTCAAAGGTGG 5308429 Query 32807 CGGGTTCTTCACC-AAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGACAGGCCC 32865 || | || ||| |||| ||| | || | | ||||| || |||| || ||||||| Sbjct 5308430 AGGCTATTTTACCGAAGCTGAA-CCGGATGTGATGCTGACGGAAGTCCATCGCCAGGCCC 5308488 Query 32866 GCGACAACCCGATC 32879 ||||| || ||| Sbjct 5308489 AGGACAATCCTATC 5308502 Score = 95.1 bits (104), Expect = 5e-15 Identities = 126/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 32334 TTCCGCCTGTTCGGCTACGCCGGAACTGGCAAGACCACGCTGGCCCGGCACATCGCCGAG 32393 || |||||||||||||| || || || |||||||||||||| || || || | || || Sbjct 5308044 TTTCGCCTGTTCGGCTATGCGGGCACGGGCAAGACCACGCTTGCGCGTCATCTGGCTGAA 5308103 Query 32394 GGCATCGACGGCACCGTTCTCTTCGCCGCCCCGACCGGGAAGGCCGCCTACGTCCTGAAG 32453 ||||| |||||| || |||| ||| ||||| |||||||| | |||||| Sbjct 5308104 GGCATTGACGGCGATGTCTGTTTCGGCGCTTTCACCGGCAAGGCCGCGCATGTCCTGCGC 5308163 Query 32454 ACGAAGGGCTGCCCGAACA--CCGGCACCATCCACCAGCTGATCTACACCCCG 32504 ||||||||| |||| | ||||||| ||||| ||||||||| |||| Sbjct 5308164 CAGAAGGGCTG--CGAAGATGCCGGCACGATCCATTCCCTGATCTACCGCCCG 5308214 >seq4 Length=3599618 Score = 95.1 bits (104), Expect = 5e-15 Identities = 191/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 5841 CGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACCACGGCCTGCGCCTGCTGGA 5900 ||| || || || || ||||| |||| ||||||||| |||||| | || || | Sbjct 1507352 CGGGCCTGCCGGCACCGGGAAAACCTACCTGGCCATGGCGGTCGGCCTCCATATGTTGAA 1507293 Query 5901 GGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCT 5960 | |||| ||||||||| || || ||||||| ||||| || ||||| | ||| || Sbjct 1507292 GAAACGGGAAATCCAGCGCATCATCCTCACCCGCCCCGCGGTCGAGGCCGGTGAAGCCCT 1507233 Query 5961 CGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCT--CACCCCGATGCTG 6018 |||||||||||| ||| | | | || ||| | || |||||||| |||| | | Sbjct 1507232 CGGCTTCCTGCCAGGCGATCTACAGGAAAAGGTAGCCCCCTACCTGCGGCCCCTCTAC-- 1507175 Query 6019 GACGCGGTGATCGACCTGGTCG-GCCCGACGATGACGAAGCGCCTCCTCGAGTCGCGCCA 6077 || || | | |||| || ||| ||||| || | | ||||| |||||| || Sbjct 1507174 GATGCCATCAACGACATGCTCGATCCCGAAGA-GGCACAGCGCTACCTCGAAGAGCAGAT 1507116 Query 6078 GCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGAC 6116 | ||| |||| || || ||||||||||| ||||| || Sbjct 1507115 CATCGAGATCGCTCCCCTCGCCTACATGCGTGGCCGCAC 1507077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191486335490560