Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028809.1 Length=58637 Score E Sequences producing significant alignments: (Bits) Value seq273 174 6e-39 seq6 98.7 4e-16 >seq273 Length=166498 Score = 174 bits (192), Expect = 6e-39 Identities = 385/563 (68%), Gaps = 26/563 (5%) Strand=Plus/Minus Query 4539 AGGCGGCGGCGACCATGC-GCATGGGCGGCGGCATCGGCTACGACTTCTCCACCCTGCGC 4597 |||| ||| |||||||| ||| |||||||||||||||||| || ||||| ||| | || Sbjct 146960 AGGCCGCGCTGACCATGCAGCA-GGGCGGCGGCATCGGCTATGATTTCTCGACCATCCGG 146902 Query 4598 CCCAAGGGCGACCTCATCGTCAAGCTGCAGTCCCGCAG----CTCCGGCCCCATCTCCTT 4653 |||||||| | | || || ||| || | || | ||| ||||| | ||||| Sbjct 146901 CCCAAGGGTG--CGGAT-GTGAAGG-GCGTGGCGGCGGATGCCTCGGGCCCGCTGTCCTT 146846 Query 4654 CATGGAGATTTTCGACGCAGTCTGCCGCTGCACGTCCTCGTCCG---GCCACCGGCGTGG 4710 |||||| | | ||||| | || ||| ||| | ||||| || || || || Sbjct 146845 CATGGATGTCTGGGACGCGATGTGTCGC---ACGATCATGTCCGCAGGCTCGCGCCGGGG 146789 Query 4711 CGCGCAGATGGGCGTCC-TGCGCATCGACCACCCCGACATCTTCGACTTCGTCCGCGCCA 4769 |||| ||||| || || ||||| ||| ||||| ||| | | ||| || ||||| Sbjct 146788 CGCGATGATGG-CGACCATGCGCTGCGATCACCCGGACGTGGAGCAATTCATCGCCGCCA 146730 Query 4770 AG-CAGAACGAGACCTTCCTGCGCGGCTTCAACATCTCCATCGCCGTCACGGACGAGTTC 4828 || | || | | || | ||||| |||||||| || || ||||| ||| ||| Sbjct 146729 AGTCCGATCCGGCCCGGC-TGCGCATGTTCAACATGTCTGTCCTGGTCACCGACCCTTTC 146671 Query 4829 ATGCGGGCC---AAGCGCGACGGCAAGCCCTTCCAGCTGAAGTTCGGCGGCCGCGTCTAC 4885 ||| |||| ||| |||||| | ||| | ||| || | |||| ||||| Sbjct 146670 ATGGAGGCCGTGAAGGCCGACGG---GTCCTGGGACCTGGTCTTTGACGGCAAGGTCTAT 146614 Query 4886 CGCGAGGTGGACCCCAACGAGCTGTGGGACGCGGTCATGCGCTCCACCTGGGACTGGGCC 4945 | | | | | | ||| |||||| || |||||| | |||| || | ||| Sbjct 146613 CACACGCTTCAGGCGCGCGATCTGTGGAACCGCATCATGCAGGCGACCTATGATTACGCC 146554 Query 4946 GAGCCGGGCGTCCTGTTCATCGACCGCATCAACGAGATGAACAACCTCCACTACTGCGAG 5005 |||||||| || | |||||||||||||||||| || |||||||| ||| ||||| Sbjct 146553 GAGCCGGGTGTGATCTTCATCGACCGCATCAACCAGGCCAACAACCTGAGCTATTGCGAA 146494 Query 5006 ACCATCGCGGCGACCAACCCGTGCGGCGAGCAGCCGCTGCCACCGTTCGGCGCCTGCCTG 5065 ||||| || ||||||||||| ||||| || ||||||||||| || | || |||||||| Sbjct 146493 ACCATTGCCGCGACCAACCCCTGCGGGGAACAGCCGCTGCCGCCCTATGGGGCCTGCCTT 146434 Query 5066 CTCGGCTCCTTCAACCTGGTGCG 5088 || ||||| ||||| ||| ||| Sbjct 146433 CTGGGCTCGGTCAACTTGGCGCG 146411 >seq6 Length=3173221 Score = 98.7 bits (108), Expect = 4e-16 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 4910 TGGGACGCGGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTTCATCGAC 4969 |||||| | ||||| | ||||| |||| ||||| ||||| || | | |||||| Sbjct 2944449 TGGGACACCATCATGACCAGCACCTACGACTATGCCGAACCGGGTTTCATCCTGATCGAC 2944508 Query 4970 CGCATCAACGAGATGAACAACCTCCACTACTGCGAGACCATCGCGGCGACCAACCCGTGC 5029 |||| ||||||||||| | | |||||| |||| || |||||||| || Sbjct 2944509 AAGGTCAATCAGATGAACAACAACTGGTTCTGCGAAGACATCCGCGCCACCAACCCCTGT 2944568 Query 5030 GGCGAGCAGCCGCTGCCACCGTTCGGCGCCTGCCTGCTCGGCTCCTTCAACCTG 5083 || |||||||| ||||| |||| |||| ||||||||| |||||| | |||||| Sbjct 2944569 GGTGAGCAGCCCCTGCCCCCGTACGGCAGCTGCCTGCTGGGCTCCGTGAACCTG 2944622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187515170010216