Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq6 181 3e-41 seq273 168 2e-37 seq244 131 5e-26 seq4 129 2e-25 seq3 116 1e-21 seq5 82.4 2e-11 >seq6 Length=3173221 Score = 181 bits (200), Expect = 3e-41 Identities = 272/378 (72%), Gaps = 14/378 (4%) Strand=Plus/Plus Query 40040 TTGTCCAGCACGCGGGCCGCGTCCTTCAT---CGCGTTGCGCG-CCTTGATCCGGCCGAA 40095 ||| || |||| ||||| ||||| || ||| || |||| || || | |||||| Sbjct 3148506 TTGCCCTGCACCCGGGCAACGTCCCGCACGACCGCCTT-CGCGGCCATGGT---GCCGAA 3148561 Query 40096 GGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTC 40155 ||| |||||| | ||| || ||||||||||| || | |||| ||| ||| Sbjct 3148562 GGTAATGATCTGCGACACCGCCTCACGCCCGTACTTCTGGGCGGTGTACTCGATCACCCT 3148621 Query 40156 GCCGCGACGCCGGTCATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGG 40213 | | || ||| ||| |||||||| ||||| ||||||||| || || || || ||| Sbjct 3148622 GTCCCG--GCCTTCCATGCAGAAGTCGACGTCAAAGTCGGGCATTGAGACCCGTTCCGGG 3148679 Query 40214 TTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATC-CCGAG 40272 |||||||| |||||||| | | ||| ||||| ||||| |||||||||||| | Sbjct 3148680 TTCAGGAAGCGCTCGAACAGCAAATCGTATTCCAGCGGATCCAGGTCGGTGATCAGCTGC 3148739 Query 40273 GCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTT 40332 ||| ||||| ||||| || ||||| | || || || || || || ||| ||| ||||| Sbjct 3148740 GCA-TAGGCTACCAGAGAGCCGGCACCGGAACCCCGGCCCGGCCCCACCGGCACACCGTT 3148798 Query 40333 CTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTG 40392 | ||||||||| ||| ||||| |||| |||||||||| |||||| |||||||| Sbjct 3148799 GTTCTTGGCCCACTTGATAAAGTCCATCACGATCAGGAAGTAGCCCGGGAAACCCATCTG 3148858 Query 40393 GATGATCATGTCGATCTC 40410 |||||| ||||| | ||| Sbjct 3148859 GATGATGATGTCCAGCTC 3148876 Score = 87.8 bits (96), Expect = 6e-13 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 39208 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTG 39267 || |||||||| |||||||||| ||||| ||||| || || || |||| || || Sbjct 3147689 CTGCTTGGCCATCTCCTCGGGCTTTTTCTTACCCATAGCGCGGCGGAGCATATCCGCACC 3147748 Query 39268 GCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 39327 |||||| ||||||| || | | ||| || || | |||||||||||||| | ||| Sbjct 3147749 ACCCAGGGTGTAGCCGGCCATTACCTGGGCGATCTGCATGACCTGCTCCTGGTACAGGAT 3147808 Query 39328 GAGCCCGTACGTCGGGTCCAG 39348 || |||||| || || ||||| Sbjct 3147809 GACCCCGTAGGTTGGCTCCAG 3147829 >seq273 Length=166498 Score = 168 bits (186), Expect = 2e-37 Identities = 229/314 (73%), Gaps = 9/314 (3%) Strand=Plus/Plus Query 40091 CCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATG 40150 |||||||| |||||| | ||||||||| ||||| ||||| ||||| ||||| Sbjct 154764 CCGAAGGTGATGATCTGCCCCACCTTGTCGCGGCCGTATTTCTCTTGAACGTAGCGGATC 154823 Query 40151 ACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40208 ||||| | || || || || |||||||||||| | ||||||||| || || || | Sbjct 154824 ACCTCTTCCCGGCGATCCATGCA--GAAGTCGATGTCGAAGTCGGGCATCGAAACCCGTT 154881 Query 40209 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCC 40268 |||||||||||||||| ||||| | ||| | ||| ||||| |||||||||||| Sbjct 154882 CGGGGTTCAGGAACCGTTCGAACAGAAGCGAATAGCGCAGCGGATCAAGGTCGGTGATCG 154941 Query 40269 CGAG-GCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACG 40327 || ||| || ||||| || || || || | || || ||||| ||||||||| | | Sbjct 154942 TCAGCGCA-TAAGCGACGAGTGAGCCCGCACCAGACCCCCGCCCCGGACCGACCGGAATG 155000 Query 40328 CCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCC 40387 ||| ||||||||||| ||| || || || |||| |||||||||| || |||||| Sbjct 155001 TCGTGATCCTTGGCCCATTGGATAAAATCCGCAACGATCAGGAAGTAGCCGGGAAAGCCC 155060 Query 40388 AT---CTGGATGAT 40398 || || |||||| Sbjct 155061 ATGCCCTCGATGAT 155074 >seq244 Length=185980 Score = 131 bits (144), Expect = 5e-26 Identities = 215/303 (71%), Gaps = 8/303 (3%) Strand=Plus/Plus Query 40091 CCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTG-ACGTACCGGAT 40149 || ||||| |||||| | ||||| ||| |||||||||| | || ||||| ||| Sbjct 106451 CCAAAGGTGATGATCTGCCCCACCTTATCGCGGCCGTACTTCT-GCTGCACGTATTTGAT 106509 Query 40150 GACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40207 || || |||| || || || |||||||||||| | |||||||||||| || || Sbjct 106510 CACTTCCTCGCGGCGATCCATGCA--GAAGTCGATGTCGAAGTCGGGCATGGAAACCCGT 106567 Query 40208 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATC 40267 || ||||||| ||| || || || | || | || ||| ||||| |||||||| || Sbjct 106568 TCCGGGTTCAAGAAGCGTTCAAACAGCAGGCTGTAGCGCAGCGGATCAAGGTCGGTAATG 106627 Query 40268 CCGAG-GCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACAC 40326 || ||| || || ||||||||||| || | ||||| ||||| || || ||| | Sbjct 106628 GTCAGCGCA-TACGCCACCAGCGAACCCGCACCAGAGCCCCGCCCCGGCCCCACCGGGAT 106686 Query 40327 GCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCC 40386 || | |||||| |||| ||| ||||| || |||| |||||| ||| ||||| || Sbjct 106687 ACCCTGTTCCTTGCCCCATTTGATAAAGTCTGCAACGATCAGGAAATAGCCAGGGAATCC 106746 Query 40387 CAT 40389 ||| Sbjct 106747 CAT 106749 >seq4 Length=3599618 Score = 129 bits (142), Expect = 2e-25 Identities = 190/267 (71%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 40122 CCCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGAC--GCCGGTCATCGAAGTC 40179 ||||||| ||||| ||| ||| ||||||||||| | || | | | | || ||| || Sbjct 1856461 CCCCGTATTTCTCACGGACATACTGGATGACCTCGGCCCGGCGGGACTGGCA--GAAATC 1856518 Query 40180 GATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCC 40239 ||| || |||||||| ||| || |||||||| || ||||| |||||||||| ||| || Sbjct 1856519 GATATCGACGTCGGGAGGGGATACACGCTCGGGATTGAGGAATCGCTCGAAGAGGAGGCC 1856578 Query 40240 GTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGC 40299 | || || ||| || | |||||| || | | ||||| | | || ||||| || || Sbjct 1856579 GAACTGCAAGGGACAGATATTGGTGATTCCCATGGCGTAGGAGGCGAGAGAACCCGCGGC 1856638 Query 40300 CGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGC 40359 ||||| || || |||||||| | ||| ||| ||||| ||| ||||| || Sbjct 1856639 GGAGCCCCGGCCGGGACCGACGGGGATATCGTGGTCCCGCGCCCACTGGATAAAGTCCGC 1856698 Query 40360 GACGACCAGGAAGTAGGACGGGAAGCC 40386 | || ||||||||||| | |||||| Sbjct 1856699 GGTGATAAGGAAGTAGGATGCGAAGCC 1856725 >seq3 Length=4400433 Score = 116 bits (128), Expect = 1e-21 Identities = 210/307 (68%), Gaps = 0/307 (0%) Strand=Plus/Plus Query 40118 TCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAG 40177 || || || ||||| ||| ||| || ||||| || |||||||| ||| | | |||| Sbjct 3849238 TCTGCACCATACTTGTCGCGGACATAGCGGATCACTTCGCCGCGCCGCTCCTGACAGAAG 3849297 Query 40178 TCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGC 40237 ||||| || | ||||||||| || || || || ||||||| ||| |||||||| | || Sbjct 3849298 TCGATATCGAAGTCGGGCATCGAGACCCGTTCCGGGTTCAAGAAGCGCTCGAACAGCAGG 3849357 Query 40238 CCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCT 40297 | || ||||| ||||| || || || ||||||||| || || || Sbjct 3849358 TCAAAGCGGAGCGGATCAAGGTCAGTAATGGTCAGCACCCAGGCGACCAAGGAGCCCGCA 3849417 Query 40298 GCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCG 40357 | ||||| || || || || ||| | | | | || |||||||| ||| |||||| Sbjct 3849418 CCAGAGCCCCGGCCCGGGCCAACCGGAATGTCTTGTTCTTTGGCCCATTTGATAAAGTCG 3849477 Query 40358 GCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGG 40417 || |||| || ||| ||| ||||||||||| | ||| ||| | | ||| || | | Sbjct 3849478 GCAACGATCAAGAAATAGCCTGGGAAGCCCATGCGCTCGATAATGCCAAGCTCATAGTCG 3849537 Query 40418 AGCTGCT 40424 ||| ||| Sbjct 3849538 AGCCGCT 3849544 >seq5 Length=3486096 Score = 82.4 bits (90), Expect = 2e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 40175 AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40234 || |||||||| | |||||||||||| || || || || || ||||| ||||| || | Sbjct 1711221 AAATCGATGTCGAAGTCGGGCATGGAAACACGTTCAGGATTGAGGAAGCGCTCAAACAGC 1711280 Query 40235 AGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACCAGCGAACC 40293 || ||| || | || || || || || ||| || ||| ||||| ||||| || || Sbjct 1711281 AGGTCGTATTCAATGGGGTCAAGATCAGTAATCTTTAGCGCA-TAGGCCACCAGAGATCC 1711339 Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353 ||| |||| |||| || || || || | | | ||| |||||||||| || || Sbjct 1711340 GGCACCCGAACCTCTGCCCGGGCCCACAGGAATATCCTGCTCTTTGGCCCAGCGAATAAA 1711399 Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTG 40392 || |||| |||||||| ||| || ||||| || Sbjct 1711400 ATCCATCACGATGAGGAAGTAACCCGGAAAACCCATTTG 1711438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160405005667368