Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028860.1 Length=52392 Score E Sequences producing significant alignments: (Bits) Value seq19 102 3e-17 seq5 91.5 5e-14 seq4 89.7 2e-13 >seq19 Length=1029424 Score = 102 bits (112), Expect = 3e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 4056 GGTCAGTAGCTCAATTGGTAGAGCAGCGGTTTCCAAAGCCGCTCGTTGGGGGTTCGAGTC 4115 || ||||||||||||||| ||||||||||| |||||| |||| ||||||||||||| || Sbjct 1022417 GGCCAGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGATTC 1022358 Query 4116 CCTCCTGGCCTGCAAT 4131 ||||||||||||| || Sbjct 1022357 CCTCCTGGCCTGCCAT 1022342 >seq5 Length=3486096 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 4056 GGTCAGTAGCTCAATTGGTAGAGCAGCGGTTTCCAAAGCCGCTCGTTGGGGGTTCGAGTC 4115 || |||||| |||||||||||||| |||| |||||| ||| |||||||||||||||| Sbjct 711213 GGCCAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAAAGTTGGGGGTTCGAGTC 711272 Query 4116 CCTCCTGGCCTGC 4128 ||||||||||||| Sbjct 711273 CCTCCTGGCCTGC 711285 >seq4 Length=3599618 Score = 89.7 bits (98), Expect = 2e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 4057 GTCAGTAGCTCAATTGGTAGAGCAGCGGTTTCCAAAGCCGCTCGTTGGGGGTTCGAGTCC 4116 |||||||||||||||||||||||| |||| |||||| ||| |||| |||||| ||||| Sbjct 3258221 GTCAGTAGCTCAATTGGTAGAGCATCGGTCTCCAAAACCGAGGGTTGCGGGTTCAAGTCC 3258162 Query 4117 CTCCTGGCCTGC 4128 |||||||| ||| Sbjct 3258161 CTCCTGGCGTGC 3258150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167531343721136