Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028890.1 Length=162486 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 7e-12 seq6 84.2 2e-11 >seq4 Length=3599618 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 27090 CTTAGCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGAATCCTAC 27149 |||||||||||||||||||| | ||| ||||||||| ||||||| ||||||||||| | Sbjct 1454033 CTTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGTAGGTCGACGGTTCGAATCCGTC 1454092 Query 27150 AGTCGGCACCAT 27161 || |||| |||| Sbjct 1454093 AGCCGGCTCCAT 1454104 >seq6 Length=3173221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 28372 CGGATAGCTCAGTTGGTAGAGCAGAGGGCTGAAAATCCTCGTGTCGTAGGTTCGATCCCT 28431 |||||||||||||||||||||||| || ||||||||| ||||||| |||||||| || Sbjct 1280316 CGGATAGCTCAGTTGGTAGAGCAGGGGATTGAAAATCCCCGTGTCGGTGGTTCGATTCCG 1280257 Query 28432 ACTCCGTCCACCAT 28445 ||||| |||||| Sbjct 1280256 CCTCCGGGCACCAT 1280243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519822443581120