Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq273 147 7e-31 seq6 136 1e-27 seq244 120 1e-22 seq4 96.9 1e-15 seq5 86.0 2e-12 seq2 84.2 7e-12 >seq273 Length=166498 Score = 147 bits (162), Expect = 7e-31 Identities = 205/284 (72%), Gaps = 5/284 (2%) Strand=Plus/Plus Query 39009 GATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACG 39068 |||||| | |||||||| | |||||| ||||| ||||| |||||||| || | || Sbjct 154775 GATCTGCCCCACCTTGTCGCGGCCGTATTTCTCTTGAACGTAGCGGATCACCTCTTCCCG 154834 Query 39069 GCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGG 39126 |||| ||| |||||||||||| | ||||||||| || || || || ||||||||| Sbjct 154835 GCGATC--CATGCAGAAGTCGATGTCGAAGTCGGGCATCGAAACCCGTTCGGGGTTCAGG 154892 Query 39127 AACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTAC 39186 ||||| ||||| | ||| | | | || || |||||||||||| || || || Sbjct 154893 AACCGTTCGAACAGAAGCGAATAGCGCAGCGGATCAAGGTCGGTGATCGTCAGCGCATAA 154952 Query 39187 GCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTC 39246 ||| | || ||||| || |||| || ||||| || |||||| | | ||| ||||| Sbjct 154953 GCGACGAGTGAGCCCGCACCAGACCCCCGCCCCGGACCGACCGGAATGTCGTGATCCTTG 155012 Query 39247 GCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAA 39290 ||||| ||| || || || |||| |||||||| | |||||| Sbjct 155013 GCCCATTGGATAAAATCCGCAACGATCAGGAAGTA-GCCGGGAA 155055 >seq6 Length=3173221 Score = 136 bits (150), Expect = 1e-27 Identities = 218/311 (70%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 39009 GATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACG 39068 |||||| | ||| |||| |||||||||| || | |||| |||||| | | || Sbjct 3148568 GATCTGCGACACCGCCTCACGCCCGTACTTCTGGGCGGTGTACTCGATCACCCTGTCCCG 3148627 Query 39069 GCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGG 39126 || | ||| |||||||| ||| | ||||||||| ||||| || || ||||||||| Sbjct 3148628 GC--CTTCCATGCAGAAGTCGACGTCAAAGTCGGGCATTGAGACCCGTTCCGGGTTCAGG 3148685 Query 39127 AACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTAC 39186 || |||||||| | | ||| | || ||||||||||||||| | || || Sbjct 3148686 AAGCGCTCGAACAGCAAATCGTATTCCAGCGGATCCAGGTCGGTGATCAGCTGCGCATAG 3148745 Query 39187 GCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTC 39246 || |||| ||||| || | || || || || || || ||| ||| ||||| | ||| Sbjct 3148746 GCTACCAGAGAGCCGGCACCGGAACCCCGGCCCGGCCCCACCGGCACACCGTTGTTCTTG 3148805 Query 39247 GCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATC 39306 ||||| ||| ||||| |||| |||||||| |||||| ||||||||| |||| Sbjct 3148806 GCCCACTTGATAAAGTCCATCACGATCAGGAAGTAGCCCGGGAAACCCATCTGGATGATG 3148865 Query 39307 ATGTCGATCTC 39317 ||||| | ||| Sbjct 3148866 ATGTCCAGCTC 3148876 Score = 105 bits (116), Expect = 2e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 38115 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTG 38174 || |||||||| | |||||||||| ||||| ||||| ||||| ||||| | || || Sbjct 3147689 CTGCTTGGCCATCTCCTCGGGCTTTTTCTTACCCATAGCGCGGCGGAGCATATCCGCACC 3147748 Query 38175 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38234 ||| |||||||| ||||||| | ||| || || | |||||||||||||| | ||| Sbjct 3147749 ACCCAGGGTGTAGCCGGCCATTACCTGGGCGATCTGCATGACCTGCTCCTGGTACAGGAT 3147808 Query 38235 GAGCCCGAAGGTCGGGTCCAG 38255 || |||| |||| || ||||| Sbjct 3147809 GACCCCGTAGGTTGGCTCCAG 3147829 >seq244 Length=185980 Score = 120 bits (132), Expect = 1e-22 Identities = 204/291 (70%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 39009 GATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTG-ACGTACCGGATCACGTCGCCAC 39067 |||||| | ||||| || | ||||||||||| | || ||||| |||||| || | | Sbjct 106462 GATCTGCCCCACCTTATCGCGGCCGTACTTCT-GCTGCACGTATTTGATCACTTCCTCGC 106520 Query 39068 GGCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAG 39125 ||||| ||| |||||||||||| | |||||||||||| || || || ||||||| Sbjct 106521 GGCGATC--CATGCAGAAGTCGATGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAA 106578 Query 39126 GAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTA 39185 ||| || || || | || | || | | || || |||||||| || || || || Sbjct 106579 GAAGCGTTCAAACAGCAGGCTGTAGCGCAGCGGATCAAGGTCGGTAATGGTCAGCGCATA 106638 Query 39186 CGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTT 39245 ||| ||||||| || || ||||||| ||||| || || ||| | || | ||||| Sbjct 106639 CGCCACCAGCGAACCCGCACCAGAGCCCCGCCCCGGCCCCACCGGGATACCCTGTTCCTT 106698 Query 39246 CGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCAT 39296 |||| ||| ||||| || |||| ||||| || ||||| ||||| Sbjct 106699 GCCCCATTTGATAAAGTCTGCAACGATCAGGAAATAGCCAGGGAATCCCAT 106749 >seq4 Length=3599618 Score = 96.9 bits (106), Expect = 1e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 38139 CTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGAT 38198 |||||| ||||| ||||| || || |||||||| |||||| ||||| ||||| |||| Sbjct 1855628 CTTCTTACCCATCGCGCGGCGTAGAAGGTCGGCACCACCGAGCGTGTATCCGGCGAGGAC 1855687 Query 38199 CTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGT 38246 || || || ||||||||||| ||||| ||||| |||| ||| |||| Sbjct 1855688 CTTTGCGGCGTTCTGCACCTGTTCCTGATAGATCATGACGCCGTAGGT 1855735 >seq5 Length=3486096 Score = 86.0 bits (94), Expect = 2e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 39082 AAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATG 39141 || |||||||| | |||||||||||| ||||| ||||| || ||||| ||||| || | Sbjct 1711221 AAATCGATGTCGAAGTCGGGCATGGAAACACGTTCAGGATTGAGGAAGCGCTCAAACAGC 1711280 Query 39142 AGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCA 39201 || ||| |||||||| || || || ||| || || || || |||| || || Sbjct 1711281 AGGTCGTATTCAATGGGGTCAAGATCAGTAATCTTTAGCGCATAGGCCACCAGAGATCCG 1711340 Query 39202 GCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAG 39261 || | || || | || ||||| || | | | ||| || ||||||| || || Sbjct 1711341 GCACCCGAACCTCTGCCCGGGCCCACAGGAATATCCTGCTCTTTGGCCCAGCGAATAAAA 1711400 Query 39262 TCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGA 39313 || |||| ||||||||| ||| || ||||| || | || ||| ||| Sbjct 1711401 TCCATCACGATGAGGAAGTAACCCGGAAAACCCATTTGTTCAATAATGCCGA 1711452 >seq2 Length=6328565 Score = 84.2 bits (92), Expect = 7e-12 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 38138 TCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGA 38197 ||||||| ||||| ||||| || || ||||| |||| |||||| | ||| |||| ||| | Sbjct 3285669 TCTTCTTACCCATAGCGCGGCGCAGAAGGTCAGCCTCACCGAGTGAGTAGCCGGACAGCA 3285728 Query 38198 TCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGA 38236 ||| || || | ||||||||||||||||| ||||| Sbjct 3285729 CCTGAGCGATCTGCATCACCTGCTCCTGGTAGACGATGA 3285767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159713811675624