Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028895.1 Length=116138 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 1e-12 seq564 84.2 2e-11 seq2 84.2 2e-11 >seq3 Length=4400433 Score = 87.8 bits (96), Expect = 1e-12 Identities = 68/77 (88%), Gaps = 3/77 (4%) Strand=Plus/Minus Query 40662 ATGGCGT-CCTAGAGAGGATTTGAACCTCTGACCTCTCCCTTAGGAGGGGAGCGCTCTAT 40720 |||||| |||| |||||||| ||||||||||||||| |||| |||||| |||||||||| Sbjct 38260 ATGGCGCACCTA-AGAGGATTCGAACCTCTGACCTCTGCCTTCGGAGGGCAGCGCTCTAT 38202 Query 40721 CCTGCTGAGCTACTAGG 40737 || ||||||||| |||| Sbjct 38201 CCAGCTGAGCTA-TAGG 38186 >seq564 Length=35331 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 40673 GAGAGGATTTGAACCTCTGACCTCTCCCTTAGGAGGGGAGCGCTCTATCCTGCTGAGCTA 40732 ||||||||| ||||||||| ||||| |||| |||||| |||||||||||| ||||||||| Sbjct 28202 GAGAGGATTCGAACCTCTGGCCTCTGCCTTCGGAGGGCAGCGCTCTATCCAGCTGAGCTA 28143 Query 40733 C 40733 | Sbjct 28142 C 28142 >seq2 Length=6328565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 40673 GAGAGGATTTGAACCTCTGACCTCTCCCTTAGGAGGGGAGCGCTCTATCCTGCTGAGCTA 40732 ||||||||| ||||||||| ||||| |||| |||||| |||||||||||| ||||||||| Sbjct 291241 GAGAGGATTCGAACCTCTGGCCTCTGCCTTCGGAGGGCAGCGCTCTATCCAGCTGAGCTA 291300 Query 40733 C 40733 | Sbjct 291301 C 291301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 371513485605748