Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq493 412 7e-111 >seq493 Length=52014 Score = 412 bits (456), Expect = 7e-111 Identities = 391/498 (79%), Gaps = 1/498 (0%) Strand=Plus/Minus Query 9365 CCGAGGTATTCGATAACGGCAGTAACGGTCGCTTTAGCCAGAATATCCCGTCCGACTTTT 9424 || |||||||| | ||| | | ||||| ||| ||||||||||||| || || | Sbjct 32812 CCAAGGTATTCAAGAACATCTGCAACGGAATTTTTTGCCAGAATATCCCTGCCAACCTGA 32753 Query 9425 GTCAGGGTTGCCAGGCTGGCAACATCATTCCCCGTAAAATACGGAAACCTGTCTGCCGCA 9484 ||||| | ||||||||| ||||||| ||| ||||||||| || | | | ||| Sbjct 32752 GTCAGTTCAGTCAGGCTGGCGGCATCATTTTCCGCAAAATACGGTAATTTATTTTTCGCC 32693 Query 9485 GTAGCAAGCCCCGCCAGCGCCGTCAAAGTGGCATCTTTCGGTTGCTTACCCGCAAGCGCA 9544 || | |||||| ||||||||||||| || |||| |||||||| |||||||||||||| Sbjct 32692 GTGGAAAGCCCTGCCAGCGCCGTCAGTGTCGCATTCTTCGGTTGTTTACCCGCAAGCGCG 32633 Query 9545 TTAGTCATGGTGGTAGCAAAATTCGGGTCATTGCCCAGCGCCGCCGCCAGCTCGTTCAGC 9604 |||||||||||||||||||||| || ||||| || ||||| || ||||| || |||||| Sbjct 32632 TTAGTCATGGTGGTAGCAAAATCTGGATCATTCCCGAGCGCTGCGGCCAGTTCATTCAGC 32573 Query 9605 GTATTCAGTGCGTCAGGCGACGAGTCTACAAGGGCGGCAATCGCGGCCATAACGAAAGCC 9664 ||||||||||||||||| |||| ||| | || | ||||||||||||| || ||||| Sbjct 32572 GTATTCAGTGCGTCAGGTGACGCGTCGATAACATCTGCAATCGCGGCCAGTACAAAAGCG 32513 Query 9665 GTGTTTGCGATCTGAGTATTATTCGTTCCCTGTCGCGCAGTTGGCGTCGTTGGCGTTCCG 9724 ||||| || ||||| ||||| || |||||| |||| ||||| | |||||||||||| Sbjct 32512 GTGTTCGCAATCTGGGTATTGTTTGTTCCCCTGAGCGCGGTTGGTGCTGTTGGCGTTCCG 32453 Query 9725 GTCAGTGCAGGGCTGTTTAATGGCGCTTTCTTGTTCGTTTCATCCATTACCGTCTTAACG 9784 |||||||| || |||| | ||| ||||| |||||||||||||||||||| |||||| Sbjct 32452 GTCAGTGCCGGACTGTCCAGTGG-GCTTTTCTGTTCGTTTCATCCATTACCACCTTAACC 32394 Query 9785 GCTTTTGGTGTTGCGGCGAGCGTCTCAGACATGCTGTTGGTCGCACTACTTAGCTGGACA 9844 || ||||| ||||| || ||||| |||||| |||||||||| ||||| || ||||| || Sbjct 32393 GCCTTTGGCGTTGCAGCAAGCGTTTCAGACGTGCTGTTGGTTGCACTGCTGAGCTGCACT 32334 Query 9845 AGACCTTTTCGCGCTGTG 9862 | || |||| || |||| Sbjct 32333 ATCCCCTTTCTCGTTGTG 32316 Score = 412 bits (456), Expect = 7e-111 Identities = 391/498 (79%), Gaps = 1/498 (0%) Strand=Plus/Minus Query 9365 CCGAGGTATTCGATAACGGCAGTAACGGTCGCTTTAGCCAGAATATCCCGTCCGACTTTT 9424 || |||||||| | ||| | | ||||| ||| ||||||||||||| || || | Sbjct 36946 CCAAGGTATTCAAGAACATCTGCAACGGAATTTTTTGCCAGAATATCCCTGCCAACCTGA 36887 Query 9425 GTCAGGGTTGCCAGGCTGGCAACATCATTCCCCGTAAAATACGGAAACCTGTCTGCCGCA 9484 ||||| | ||||||||| ||||||| ||| ||||||||| || | | | ||| Sbjct 36886 GTCAGTTCAGTCAGGCTGGCGGCATCATTTTCCGCAAAATACGGTAATTTATTTTTCGCC 36827 Query 9485 GTAGCAAGCCCCGCCAGCGCCGTCAAAGTGGCATCTTTCGGTTGCTTACCCGCAAGCGCA 9544 || | |||||| ||||||||||||| || |||| |||||||| |||||||||||||| Sbjct 36826 GTGGAAAGCCCTGCCAGCGCCGTCAGTGTCGCATTCTTCGGTTGTTTACCCGCAAGCGCG 36767 Query 9545 TTAGTCATGGTGGTAGCAAAATTCGGGTCATTGCCCAGCGCCGCCGCCAGCTCGTTCAGC 9604 |||||||||||||||||||||| || ||||| || ||||| || ||||| || |||||| Sbjct 36766 TTAGTCATGGTGGTAGCAAAATCTGGATCATTCCCGAGCGCTGCGGCCAGTTCATTCAGC 36707 Query 9605 GTATTCAGTGCGTCAGGCGACGAGTCTACAAGGGCGGCAATCGCGGCCATAACGAAAGCC 9664 ||||||||||||||||| |||| ||| | || | ||||||||||||| || ||||| Sbjct 36706 GTATTCAGTGCGTCAGGTGACGCGTCGATAACATCTGCAATCGCGGCCAGTACAAAAGCG 36647 Query 9665 GTGTTTGCGATCTGAGTATTATTCGTTCCCTGTCGCGCAGTTGGCGTCGTTGGCGTTCCG 9724 ||||| || ||||| ||||| || |||||| |||| ||||| | |||||||||||| Sbjct 36646 GTGTTCGCAATCTGGGTATTGTTTGTTCCCCTGAGCGCGGTTGGTGCTGTTGGCGTTCCG 36587 Query 9725 GTCAGTGCAGGGCTGTTTAATGGCGCTTTCTTGTTCGTTTCATCCATTACCGTCTTAACG 9784 |||||||| || |||| | ||| ||||| |||||||||||||||||||| |||||| Sbjct 36586 GTCAGTGCCGGACTGTCCAGTGG-GCTTTTCTGTTCGTTTCATCCATTACCACCTTAACC 36528 Query 9785 GCTTTTGGTGTTGCGGCGAGCGTCTCAGACATGCTGTTGGTCGCACTACTTAGCTGGACA 9844 || ||||| ||||| || ||||| |||||| |||||||||| ||||| || ||||| || Sbjct 36527 GCCTTTGGCGTTGCAGCAAGCGTTTCAGACGTGCTGTTGGTTGCACTGCTGAGCTGCACT 36468 Query 9845 AGACCTTTTCGCGCTGTG 9862 | || |||| || |||| Sbjct 36467 ATCCCCTTTCTCGTTGTG 36450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104437492169208