Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028931.1 Length=55108 Score E Sequences producing significant alignments: (Bits) Value seq273 138 4e-28 seq6 111 6e-20 seq5 80.6 9e-11 >seq273 Length=166498 Score = 138 bits (152), Expect = 4e-28 Identities = 370/553 (67%), Gaps = 26/553 (5%) Strand=Plus/Minus Query 3984 GACCATGC-GCATGGGCGGCGGCATCGGCTACGACTTCTCCACCCTGCGCCCCAAGGGCG 4042 |||||||| ||| |||||||||||||||||| || ||||| ||| | || |||||||| | Sbjct 146950 GACCATGCAGCA-GGGCGGCGGCATCGGCTATGATTTCTCGACCATCCGGCCCAAGGGTG 146892 Query 4043 ACCTGATCGTCAAGCTGCAGTCCCGCAG----CTCCGGCCCCATCTCCTTCATGGAGATT 4098 | ||| || ||| || | || | ||| ||||| | ||||||||||| | Sbjct 146891 --CGGAT-GTGAAGG-GCGTGGCGGCGGATGCCTCGGGCCCGCTGTCCTTCATGGATGTC 146836 Query 4099 TTCGACGCGGTCTGCCGCTGCACGTCCTCGTCCG---GCCACCGCCGTGGCGCCCAGATG 4155 | |||||| | || ||| ||| | ||||| || ||||| ||||| |||| Sbjct 146835 TGGGACGCGATGTGTCGC---ACGATCATGTCCGCAGGCTCGCGCCGGGGCGCGATGATG 146779 Query 4156 GGCGTCATGCGCATCGACCACCCCGACATCTTCGAGTTCATCCACGCCAAG-CAGAACGA 4214 | ||||||| ||| ||||| ||| | | |||||| ||||||| | || | Sbjct 146778 GCGACCATGCGCTGCGATCACCCGGACGTGGAGCAATTCATCGCCGCCAAGTCCGATCCG 146719 Query 4215 GCACTTCCTGCGCGGCTTCAATATCTCCATCGCCGTCACCGACGAGTTCATGGAGTGCAA 4274 || | | ||||| ||||| || || || ||||||||| ||||||||| || Sbjct 146718 GCCCGGC-TGCGCATGTTCAACATGTCTGTCCTGGTCACCGACCCTTTCATGGAG-GC-- 146663 Query 4275 GCGGGACGGCAAGCCGTTCCAG----CTGAAGTGGGGCGGGCGCGTCTACCGCGAGGTCG 4330 || || ||| | | ||| | ||| | | ||| ||||| | | | | Sbjct 146662 -CGTGAAGGCCGACGGGTCCTGGGACCTGGTCTTTGACGGCAAGGTCTATCACACGCTTC 146604 Query 4331 ACCCCAACGAGCTGTGGGACGCTGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCG 4390 | | ||| |||||| || |||||| | |||| || | ||||||||||| | Sbjct 146603 AGGCGCGCGATCTGTGGAACCGCATCATGCAGGCGACCTATGATTACGCCGAGCCGGGTG 146544 Query 4391 TCCTGTTCATCGACACCATCAACCGCATGAACAATCTCTGGTACTGCGAGGAGATTGCGG 4450 | | ||||||||| |||||||| ||||| || | || ||||| ||||| | Sbjct 146543 TGATCTTCATCGACCGCATCAACCAGGCCAACAACCTGAGCTATTGCGAAACCATTGCCG 146484 Query 4451 CCACCAACCCGTGCGGCGAGCAGCCGCTGCCTCCGTTCGGCGCCTGCCTGCTTGGCTCCT 4510 | |||||||| ||||| || ||||||||||| || | || |||||||| || ||||| Sbjct 146483 CGACCAACCCCTGCGGGGAACAGCCGCTGCCGCCCTATGGGGCCTGCCTTCTGGGCTCGG 146424 Query 4511 TCAACCTGGTGCG 4523 ||||| ||| ||| Sbjct 146423 TCAACTTGGCGCG 146411 Score = 89.7 bits (98), Expect = 2e-13 Identities = 165/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 4779 GCGCGACGAGTCCTACCGCGCGTCGGCCCTGTTGGCCCATGAGAAGGGCTCCTTCCCGCT 4838 ||||| |||| |||| | || |||| | |||| | || |||||| | || ||||| Sbjct 146151 GCGCG-CGAGGCCTATCTGGCCTCGGTCGATCTGGCGAAGGAAAAGGGCGCGTTTCCGCT 146093 Query 4839 CTTCGAGGCCGAGCAGTACCTGGAGTCCGCCTTCGTGAAGACCCTGCCCGAGGACGTCCG 4898 ||||| ||||| ||||||| ||||| | || || | || ||||||||| || Sbjct 146092 GTTCGATGCCGATGCTTACCTGGCGTCCGGCACGATGCAGGCGATGGACGAGGACGTGCG 146033 Query 4899 CG-AGATGATCGCCGAGCTGGGCATCCGCAACTCCCACCTGACCTCCATCGCGCCGACCG 4957 || || | | ||||| | ||||||||||| | | ||||| ||| | |||||||| | Sbjct 146032 CGCAGCCG-TGGCCGAACATGGCATCCGCAATGCGCTGCTGACGTCCGTTGCGCCGACGG 145974 Query 4958 GCACCATCAGCCTGTGCGCCGACAACGTGAGCTCCGGCCTGGAGCCCGTGTTCTCCTA 5015 | || || |||| |||| ||||| || ||||| | ||||| || || |||| Sbjct 145973 GGACGATTTCGCTGTATGCCGGGAACGTCAGTTCCGGGATCGAGCCGGTCTTTGCCTA 145916 >seq6 Length=3173221 Score = 111 bits (122), Expect = 6e-20 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 4345 TGGGACGCTGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTTCATCGAC 4404 |||||| | ||||| | ||||| |||| ||||| ||||| || | | |||||| Sbjct 2944449 TGGGACACCATCATGACCAGCACCTACGACTATGCCGAACCGGGTTTCATCCTGATCGAC 2944508 Query 4405 ACCATCAACCGCATGAACAATCTCTGGTACTGCGAGGAGATTGCGGCCACCAACCCGTGC 4464 | |||| | |||||||| ||||| |||||| || || ||||||||||| || Sbjct 2944509 AAGGTCAATCAGATGAACAACAACTGGTTCTGCGAAGACATCCGCGCCACCAACCCCTGT 2944568 Query 4465 GGCGAGCAGCCGCTGCCTCCGTTCGGCGCCTGCCTGCTTGGCTCCTTCAACCTG 4518 || |||||||| ||||| |||| |||| ||||||||| |||||| | |||||| Sbjct 2944569 GGTGAGCAGCCCCTGCCCCCGTACGGCAGCTGCCTGCTGGGCTCCGTGAACCTG 2944622 >seq5 Length=3486096 Score = 80.6 bits (88), Expect = 9e-11 Identities = 130/186 (70%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 4333 CCCAACGAGCTGTGGGACGCTGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTC 4392 ||||| || || |||||| ||||| ||||||||| |||| |||||||| || | Sbjct 2673201 CCCAAAGA-CTCTGGGACATGATCATGAGCTCCACCTACGACTTTGCCGAGCCAGGGTTT 2673143 Query 4393 CTGTTCATCGACACCATCAACCGCATGAACAATCTCTGGTACTGCGAGGAGATTGCGGCC 4452 | | ||||| | ||||| ||||||||| ||||| || | ||| ||| Sbjct 2673142 ATTCTGATCGATAAGGTCAACGAGATGAACAATAACTGGTGGACAGAAAATATTCGCGCC 2673083 Query 4453 ACCAACCCGTGCGGCGAGCAGCCGCTGCCTCCGTTCGGCGCCTGCCTGCTTGGCTCCTTC 4512 |||||||| || || || |||||||| || || | ||| |||| | |||||||| || Sbjct 2673082 ACCAACCCCTGTGGAGAACAGCCGCTACCACCCTATGGCAGCTGCTTACTTGGCTCAGTC 2673023 Query 4513 AACCTG 4518 || ||| Sbjct 2673022 AATCTG 2673017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176222468172880