Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq2 116 5e-21 >seq2 Length=6328565 Score = 116 bits (128), Expect = 5e-21 Identities = 142/187 (76%), Gaps = 10/187 (5%) Strand=Plus/Plus Query 181461 GTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCCAAGAAGACGTCCACGGACCGC 181520 |||| ||||| ||||| |||||||||||||||| || | ||||| ||| |||| ||| Sbjct 4240812 GTCAAAAGCGCATAAGATGCGATGTTGAAGGGAACGCCGAGAAAGACATCCGCGGAGCGC 4240871 Query 181521 TGATTCCAAA---GGCAGGACAGTTTGTCAT-TGCGAACATAGAACTGGAATCCGTAGTG 181576 || | ||| ||||||| |||||| | | ||| |||||||||||||| | |||| Sbjct 4240872 TGGT---AAAGCTGGCAGGAGAGTTTGCCGTCCGCG-ACATAGAACTGGAACAGGGAGTG 4240927 Query 181577 GCACGGCGGCAAAGCCATTAGATCGACC-GCGCCGACATTCCAAGCCGAGACCATATGAC 181635 ||||||||||| |||||| ||| ||| | |||| ||||| |||||||| || | | Sbjct 4240928 GCACGGCGGCAGCGCCATTTCATCAACCAGGGCCG-GGTTCCAGGCCGAGACGATCAGGC 4240986 Query 181636 GACGGCT 181642 | ||||| Sbjct 4240987 GGCGGCT 4240993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 661347548614560