Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq273 147 7e-31 seq6 141 3e-29 seq244 129 2e-25 seq4 100 9e-17 seq2 89.7 2e-13 seq5 86.0 2e-12 >seq273 Length=166498 Score = 147 bits (162), Expect = 7e-31 Identities = 205/284 (72%), Gaps = 5/284 (2%) Strand=Plus/Plus Query 39442 GATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACG 39501 |||||| | |||||||||| |||||| ||||| ||||| |||||||| || | || Sbjct 154775 GATCTGCCCCACCTTGTCGCGGCCGTATTTCTCTTGAACGTAGCGGATCACCTCTTCCCG 154834 Query 39502 GCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGG 39559 |||| ||| |||||||||||| | ||||||||| || || || || ||||||||| Sbjct 154835 GCGATC--CATGCAGAAGTCGATGTCGAAGTCGGGCATCGAAACCCGTTCGGGGTTCAGG 154892 Query 39560 AACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTAC 39619 ||||| ||||| | ||| | | | || || |||||||||||| || || || Sbjct 154893 AACCGTTCGAACAGAAGCGAATAGCGCAGCGGATCAAGGTCGGTGATCGTCAGCGCATAA 154952 Query 39620 GCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTC 39679 ||| | || ||||| || |||| || ||||| || |||||| | ||| ||||| Sbjct 154953 GCGACGAGTGAGCCCGCACCAGACCCCCGCCCCGGACCGACCGGAATGTCGTGATCCTTG 155012 Query 39680 GCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAA 39723 ||||| ||| || || || |||| |||||||| | |||||| Sbjct 155013 GCCCATTGGATAAAATCCGCAACGATCAGGAAGTA-GCCGGGAA 155055 >seq6 Length=3173221 Score = 141 bits (156), Expect = 3e-29 Identities = 277/406 (68%), Gaps = 10/406 (2%) Strand=Plus/Plus Query 39350 TTGGTCAGCTTCTCGCCGACCTGAAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCAT- 39408 |||| |||||| ||| | | | ||| ||| || |||| ||||| ||||| || Sbjct 3148476 TTGGACAGCTTGTCGGCCAGGCCATAGGATTTGCCCTGCACCCGGGCAACGTCCCGCACG 3148535 Query 39409 --CGCGTTGCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCG 39466 ||| || |||| || | |||| | || |||||| | ||| || | ||| Sbjct 3148536 ACCGCCTTCGCGGCCATGGT---GCCGAAGGTAATGATCTGCGACACCGCCTCACGCCCG 3148592 Query 39467 TACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATC--GAAGTCGATGT 39524 ||||||| || | |||| |||||| | | |||| | ||| |||||||| || Sbjct 3148593 TACTTCTGGGCGGTGTACTCGATCACCCTGTCCCGGC--CTTCCATGCAGAAGTCGACGT 3148650 Query 39525 CCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAG 39584 | | ||||||||| ||||| || || ||||||||||| |||||||| | | ||| Sbjct 3148651 CAAAGTCGGGCATTGAGACCCGTTCCGGGTTCAGGAAGCGCTCGAACAGCAAATCGTATT 3148710 Query 39585 GGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGC 39644 | || ||||||||||||||| | || || || |||| ||||| || | || | Sbjct 3148711 CCAGCGGATCCAGGTCGGTGATCAGCTGCGCATAGGCTACCAGAGAGCCGGCACCGGAAC 3148770 Query 39645 CACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGA 39704 | || || || || ||| ||||||||| | ||| ||||| ||| ||||| |||| Sbjct 3148771 CCCGGCCCGGCCCCACCGGCACACCGTTGTTCTTGGCCCACTTGATAAAGTCCATCACGA 3148830 Query 39705 CGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTC 39750 |||||||| |||||| ||||||||| |||| ||||| | ||| Sbjct 3148831 TCAGGAAGTAGCCCGGGAAACCCATCTGGATGATGATGTCCAGCTC 3148876 Score = 105 bits (116), Expect = 2e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607 || |||||||| | |||||||||| ||||| ||||| ||||| ||||| | || || Sbjct 3147689 CTGCTTGGCCATCTCCTCGGGCTTTTTCTTACCCATAGCGCGGCGGAGCATATCCGCACC 3147748 Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667 ||| |||||||| ||||||| | ||| || || | |||||||||||||| | ||| Sbjct 3147749 ACCCAGGGTGTAGCCGGCCATTACCTGGGCGATCTGCATGACCTGCTCCTGGTACAGGAT 3147808 Query 38668 GAGCCCGAAGGTCGGGTCCAG 38688 || |||| |||| || ||||| Sbjct 3147809 GACCCCGTAGGTTGGCTCCAG 3147829 >seq244 Length=185980 Score = 129 bits (142), Expect = 2e-25 Identities = 206/291 (71%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 39442 GATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTG-ACGTACCGGATCACGTCGCCAC 39500 |||||| | ||||| |||| ||||||||||| | || ||||| |||||| || | | Sbjct 106462 GATCTGCCCCACCTTATCGCGGCCGTACTTCT-GCTGCACGTATTTGATCACTTCCTCGC 106520 Query 39501 GGCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAG 39558 ||||| ||| |||||||||||| | |||||||||||| || || || ||||||| Sbjct 106521 GGCGATC--CATGCAGAAGTCGATGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAA 106578 Query 39559 GAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTA 39618 ||| || || || | || | || | | || || |||||||| || || || || Sbjct 106579 GAAGCGTTCAAACAGCAGGCTGTAGCGCAGCGGATCAAGGTCGGTAATGGTCAGCGCATA 106638 Query 39619 CGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTT 39678 ||| ||||||| || || ||||||| ||||| || || ||| | ||| | ||||| Sbjct 106639 CGCCACCAGCGAACCCGCACCAGAGCCCCGCCCCGGCCCCACCGGGATACCCTGTTCCTT 106698 Query 39679 CGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCAT 39729 |||| ||| ||||| || |||| ||||| || ||||| ||||| Sbjct 106699 GCCCCATTTGATAAAGTCTGCAACGATCAGGAAATAGCCAGGGAATCCCAT 106749 >seq4 Length=3599618 Score = 100 bits (110), Expect = 9e-17 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 38572 CTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGAT 38631 |||||| ||||| ||||| || ||||||||||| |||||| ||||| ||||| |||| Sbjct 1855628 CTTCTTACCCATCGCGCGGCGTAGAAGGTCGGCACCACCGAGCGTGTATCCGGCGAGGAC 1855687 Query 38632 CTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGT 38679 || || || ||||||||||| ||||| ||||| |||| ||| |||| Sbjct 1855688 CTTTGCGGCGTTCTGCACCTGTTCCTGATAGATCATGACGCCGTAGGT 1855735 >seq2 Length=6328565 Score = 89.7 bits (98), Expect = 2e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 38571 TCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGA 38630 ||||||| ||||| ||||| || |||||||| |||| |||||| | ||| |||| ||| | Sbjct 3285669 TCTTCTTACCCATAGCGCGGCGCAGAAGGTCAGCCTCACCGAGTGAGTAGCCGGACAGCA 3285728 Query 38631 TCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGA 38669 ||| || || | ||||||||||||||||| ||||| Sbjct 3285729 CCTGAGCGATCTGCATCACCTGCTCCTGGTAGACGATGA 3285767 >seq5 Length=3486096 Score = 86.0 bits (94), Expect = 2e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 39515 AAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATG 39574 || |||||||| | |||||||||||| || || ||||| || ||||| ||||| || | Sbjct 1711221 AAATCGATGTCGAAGTCGGGCATGGAAACACGTTCAGGATTGAGGAAGCGCTCAAACAGC 1711280 Query 39575 AGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCA 39634 || ||| |||||||| || || || ||| || || || || |||| || || Sbjct 1711281 AGGTCGTATTCAATGGGGTCAAGATCAGTAATCTTTAGCGCATAGGCCACCAGAGATCCG 1711340 Query 39635 GCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAG 39694 || | || || | || ||||| || | | | | ||| || ||||||| || || Sbjct 1711341 GCACCCGAACCTCTGCCCGGGCCCACAGGAATATCCTGCTCTTTGGCCCAGCGAATAAAA 1711400 Query 39695 TCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGA 39746 || |||| ||||||||| ||| || ||||| || | || ||| ||| Sbjct 1711401 TCCATCACGATGAGGAAGTAACCCGGAAAACCCATTTGTTCAATAATGCCGA 1711452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160238607113800