Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028980.1 Length=62181 Score E Sequences producing significant alignments: (Bits) Value seq273 134 5e-27 seq6 98.7 4e-16 >seq273 Length=166498 Score = 134 bits (148), Expect = 5e-27 Identities = 459/698 (66%), Gaps = 42/698 (6%) Strand=Plus/Minus Query 33082 CTGTGGGACGCGATCATGCGCGGGACCTGGGACTGGGCGGAGCCTGGGGTGCTGTTCATC 33141 |||||| || ||||||| | ||||| || | || ||||| || ||| | |||||| Sbjct 146592 CTGTGGAACCGCATCATGCAGGCGACCTATGATTACGCCGAGCCGGGTGTGATCTTCATC 146533 Query 33142 GACGCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACCAACCCC 33201 ||| ||||||| |||||||| | || ||||| ||||| ||||| ||||||||| Sbjct 146532 GACCGCATCAACCAGGCCAACAACCTGAGCTATTGCGAAACCATTGCCGCGACCAACCCC 146473 Query 33202 TGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTTCAACT----- 33256 ||||| || || ||||| |||||||| || |||||| | ||||||| |||||| Sbjct 146472 TGCGGGGAACAGCCGCTGCCGCCCTATGGGGCCTGCCTTCTGGGCTCGGTCAACTTGGCG 146413 Query 33257 ----TGGTCAAGTACATCTTCAAGGACGGGGCGGGCCGCT--ACGCCTTCGA-CTGGGAC 33309 |||| | || ||| |||||| || | ||| ||| | | |||| | Sbjct 146412 CGGATGGTGGTGAACCCGTTCGAGGACGCAGC--ACAGCTGGACGAGGCCAAGCTGG--C 146357 Query 33310 CAGTACCGCGAGGACATCCCGCAGGTGGTCCGCGCGATGGACAACGTGGTTGATCGCGCG 33369 || ||| | | ||| || || || ||||||||| || ||| | || Sbjct 146356 CA--ACCTGGTGCGCAT------GGCCGTGCGGATGATGGACAATACCGTCGATGCCTCG 146305 Query 33370 ATCTACCCGCTGCCGCAGCAGAAGCAGGAAGCCAAGGACAAGCGCCGCATGGGCCTCGGG 33429 | | |||||| | |||| || || ||| ||| |||||||||||| || || || Sbjct 146304 AATTTCCCGCTTGAGGCGCAGGCGCGCGAGGCCGAGGCCAAGCGCCGCATCGGTCTGGGC 146245 Query 33430 ATCACCGGCCTGGCCAA--CGCTGCCGAAGCCCTGGGCCATGAG-TACGGTTCGCCCGCC 33486 ||||||| ||||| | |||||| || | | |||| || | || || ||| || Sbjct 146244 GTCACCGGTCTGGCAGATGCGCTGCTGATGGTC-GGGC--TGCGCTATGGCTCGGACG-- 146190 Query 33487 TTCCTCGCCTTCG-AGGCGGAGGTGCTGGACACG-CTG--CGTG-ACGAGTCCTACCTGG 33541 || | || || | || | ||||| || ||| || | |||| |||| |||| Sbjct 146189 --AGGCGGCGGCGCAGACCGAAG-CCTGGATGCGTCTGATCGCGCGCGAGGCCTATCTGG 146133 Query 33542 CCAGTGCCCACATCGCCAAGGTCAAGGGCTCCTTCCCGAAGTTCGACAAGGACAAGTACC 33601 || | | | | || |||| |||||| | || ||| |||||| || |||| Sbjct 146132 CCTCGGTCGATCTGGCGAAGGAAAAGGGCGCGTTTCCGCTGTTCGATGCCGATGCTTACC 146073 Query 33602 TGCAGGGCCAGTTC-ATCAAGACCCTCCGCGAGGACGTGCGGGACGCCATCGCCAAATAC 33660 || | || | | || || | | |||||||||||| | ||| | ||| || | Sbjct 146072 TG-GCGTCCGGCACGATGCAGGCGATGGACGAGGACGTGCGCGCAGCCGTGGCCGAACAT 146014 Query 33661 GGCATCCGCAACTCCCACCTCACTTCCATCGCCCCGACCGGGACCATCAGCCTGTGCGCC 33720 ||||||||||| | | || || ||| | || ||||| ||||| || |||| ||| Sbjct 146013 GGCATCCGCAATGCGCTGCTGACGTCCGTTGCGCCGACGGGGACGATTTCGCTGTATGCC 145954 Query 33721 GACAACGTCAGCTCCGGGATTGAGCCGGTGTTCGCCTA 33758 | |||||||| |||||||| |||||||| || ||||| Sbjct 145953 GGGAACGTCAGTTCCGGGATCGAGCCGGTCTTTGCCTA 145916 >seq6 Length=3173221 Score = 98.7 bits (108), Expect = 4e-16 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 33085 TGGGACGCGATCATGCGCGGGACCTGGGACTGGGCGGAGCCTGGGGTGCTGTTCATCGAC 33144 |||||| | |||||| | | |||| |||| || || || || | | | |||||| Sbjct 2944449 TGGGACACCATCATGACCAGCACCTACGACTATGCCGAACCGGGTTTCATCCTGATCGAC 2944508 Query 33145 GCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACCAACCCCTGC 33204 | |||| | ||||||||| ||||| |||||| |||| ||||||||||||||| Sbjct 2944509 AAGGTCAATCAGATGAACAACAACTGGTTCTGCGAAGACATCCGCGCCACCAACCCCTGT 2944568 Query 33205 GGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTTCAACTTG 33258 |||||||| || || || || ||||| |||| || |||||||| | ||| || Sbjct 2944569 GGTGAGCAGCCCCTGCCCCCGTACGGCAGCTGCCTGCTGGGCTCCGTGAACCTG 2944622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198852625970184