Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_028999.1 Length=309208 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 8e-14 seq604 86.0 1e-11 seq2 86.0 1e-11 seq371 84.2 4e-11 >seq4 Length=3599618 Score = 93.3 bits (102), Expect = 8e-14 Identities = 64/71 (90%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 294860 ATGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCTAC 294919 |||| |||| | || ||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 1454104 ATGGAGCCGGCTGACGGATTCGAACC-GTCGACCTACTGATTACAAATCAGTTGCTCTAC 1454046 Query 294920 CAGCTGAGCTA 294930 || |||||||| Sbjct 1454045 CAACTGAGCTA 1454035 >seq604 Length=28631 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/59 (93%), Gaps = 1/59 (2%) Strand=Plus/Minus Query 294873 AGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCTACCAGCTGAGCTAT 294931 |||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||||| Sbjct 12313 AGGGGTTCGAACCC-TGGACCTACTGATTAAAAGTCAGTTGCTCTACCAGCTGAGCTAT 12256 >seq2 Length=6328565 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/59 (93%), Gaps = 1/59 (2%) Strand=Plus/Minus Query 294873 AGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCTACCAGCTGAGCTAT 294931 |||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||||| Sbjct 3114696 AGGGGTTCGAACCC-TGGACCTACTGATTAAAAGTCAGTTGCTCTACCAGCTGAGCTAT 3114639 Score = 84.2 bits (92), Expect = 4e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 294857 AATATGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTC 294916 || ||||||||| ||| ||||||||||||| ||||| |||||||| ||| ||||| Sbjct 3525973 AAAATGGTGCCGGCAGCAGGATTCGAACCCG-CGACCCCGAGATTACAAATCACGTGCTC 3525915 Query 294917 TACCAGCTGAGCTATAACGGC 294937 |||||||||||||||| |||| Sbjct 3525914 TACCAGCTGAGCTATACCGGC 3525894 >seq371 Length=98968 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 294861 TGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCTACC 294920 ||||||| || | ||| ||||||| | |||| ||||||||||| |||||||||||||| Sbjct 955 TGGTGCCCCCACACGGACTCGAACC-GCGGACCCACTGATTACAAATCAGTTGCTCTACC 1013 Query 294921 AGCTGAGCTATAACGGCA 294938 |||||||||||| |||| Sbjct 1014 AGCTGAGCTATAGGGGCA 1031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989325121279996