Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq493 170 4e-38 >seq493 Length=52014 Score = 170 bits (188), Expect = 4e-38 Identities = 417/628 (66%), Gaps = 23/628 (4%) Strand=Plus/Plus Query 13121 ACGCAGATGGTAATGCGGAAACCACGGTTAGAAACATTGCATTTAACTACATAGTGAGGC 13180 |||| | ||||| ||||||| ||| || | |||||||||||||||||| || ||||||| Sbjct 37636 ACGCTGCGGGTAACGCGGAAAACACCGTCAAAAACATTGCATTTAACTATATTGTGAGGC 37695 Query 13181 TGGCATAATGACTTTTAAAATGAGCAGCAAAGCGCAGACAATTAAAATTTTCAATCTGCG 13240 | |||||||| | || | |||||| || | | ||| || ||||||| ||||||| Sbjct 37696 TTGCATAATGGCATTCAGAATGAGTGAACAACCACGGACCATAAAAATTTATAATCTGCT 37755 Query 13241 TTCAGATACTAACGAATTTATTGGTGCGGGCGATGCGTATATCCCGCCGCACACTGGATT 13300 | | ||||| ||||||||||||| || || || ||||| ||||| || || || | Sbjct 37756 GGCCGGAACTAATGAATTTATTGGTGAAGGTGACGCATATATTCCGCCTCATACCGGTCT 37815 Query 13301 ACCGGCTAATTGTACTGATGTCGCCCCTCCTGAAATTCCGACCAGCCATATTGCGATATT 13360 || || || |||| ||| | || || || || |||||| | || | | || | || Sbjct 37816 GCCTGCAAACAGTACCGATATTGCACCGCCAGATATTCCGGCTGGCTTTGTGGCTGTTTT 37875 Query 13361 TGA---TGCTGAAACACAGACGTGGACTCTGCATGAAGACCACAGAGGTAAAGCGGTTTA 13417 | || ||| || ||||| ||| ||||||||| | |||||| | || || Sbjct 37876 CAACAGTGATGAGGCA---TCGTGGCATCTCGTTGAAGACCATCGGGGTAAAACCGTCTA 37932 Query 13418 TGACACAACAACCGGTAATCAGGTTTATATCTCCGAACCCGGCCCGTTGCCTGAAAATGT 13477 |||| | |||| | | | | ||| || |||| ||| ||||| || |||||| | Sbjct 37933 TGACGTGGCTTCCGGCGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATTT 37992 Query 13478 CACATCAGTTTCGCCCGAGAGTCAATACCAGAAATGGGATGGTAAGGCATGGGTGAAAGA 13537 || | | ||||| | | |||| ||||| ||| | || | || |||||||| || Sbjct 37993 TACCTGGTTATCGCCGGGAGGGGAATATCAGAAGTGGAACGGCACAGCCTGGGTGAAGGA 38052 Query 13538 TGAAGTTGCGGAAGCTGCAGCA------CGACTTATTGAAGCGGAAGGGACAAAAAACAA 13591 | ||||||| | | | || | || ||||||| |||||||| | Sbjct 38053 ------TACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAAAAG 38106 Query 13592 CCTTCTGCAAAT-GGCTTTGACGAAAATAGCGCCATTACAGGATGCAGTTGAGCTTGATA 13650 ||| |||| | | | ||| | | || ||||| | |||||||| | || || || | Sbjct 38107 CCTGATGCAGGTAGCCAGTGA-GCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAA 38165 Query 13651 TCGCTACGAGTGAAGAGAGAGCGCAGCTCAACGAGTGGAAAAAATACAGGGTACTGGTAA 13710 | || |||| ||||| | || ||| | | ||||| || || |||| || | | Sbjct 38166 TTGCAACGAAGGAAGAAACCTCGTTGCTGGAAGCCTGGAAGAAGTATCGGGTGTTGCTGA 38225 Query 13711 ACAGGGTGGATACAT---CTGCGCCTGA 13735 || | || ||||||| |||| ||||| Sbjct 38226 ACCGTGTTGATACATCAACTGCACCTGA 38253 Score = 140 bits (154), Expect = 6e-29 Identities = 202/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 12636 TCCGCCCGGTGTTCCCCTTCCGTGGCCGTCTGACACTATCCCTGCCGGTTATGCCCTGAT 12695 |||| | |||| || | |||||||| || || | | || | || || | |||||| Sbjct 32834 TCCGGCAGGTGCGCCGATCCCGTGGCCATCAGATATCGTTCCGTCTGGCTACGTCCTGAT 32893 Query 12696 GCAGGGGCAGGTATTTGATAAGAACGTTTATCCCTTACTGGCAATAGCATATCCATCCGG 12755 ||||||||||| ||||| || | || || ||| || | || |||||||| || Sbjct 32894 GCAGGGGCAGGCGTTTGACAAATCAGCCTACCCAAAACTTGCTGTCGCGTATCCATCGGG 32953 Query 12756 CACTATTCCGGACATGCGAGGCTGGACAATCAAAGGTAAGCCTGTCAGTGGACGTGCGGT 12815 |||| || |||||||||||||||||||| || || || | ||| || ||||| || Sbjct 32954 TGTGCTTCCTGATATGCGAGGCTGGACAATCAAGGGGAAACCCGCCAGCGGTCGTGCTGT 33013 Query 12816 GCTGTCGCAAGAACTGGACGGTAACAAATCGCACAGTCACAGCGCCAGAGCGCAGGATAC 12875 |||| || |||| ||| || | || ||||||| ||||| ||||| || | ||| Sbjct 33014 ATTGTCTCAGGAACAGGATGGAATTAAGTCGCACACCCACAGTGCCAGTGCATCCGGTAC 33073 Query 12876 CGACTTAGGGGCGAAAGCTACCTCATCCTTTGATTACGGCACGAA 12920 || || ||| ||||| | || || || ||||||||||| ||||| Sbjct 33074 GGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGGACGAA 33118 Score = 140 bits (154), Expect = 6e-29 Identities = 202/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 12636 TCCGCCCGGTGTTCCCCTTCCGTGGCCGTCTGACACTATCCCTGCCGGTTATGCCCTGAT 12695 |||| | |||| || | |||||||| || || | | || | || || | |||||| Sbjct 36968 TCCGGCAGGTGCGCCGATCCCGTGGCCATCAGATATCGTTCCGTCTGGCTACGTCCTGAT 37027 Query 12696 GCAGGGGCAGGTATTTGATAAGAACGTTTATCCCTTACTGGCAATAGCATATCCATCCGG 12755 ||||||||||| ||||| || | || || ||| || | || |||||||| || Sbjct 37028 GCAGGGGCAGGCGTTTGACAAATCAGCCTACCCAAAACTTGCTGTCGCGTATCCATCGGG 37087 Query 12756 CACTATTCCGGACATGCGAGGCTGGACAATCAAAGGTAAGCCTGTCAGTGGACGTGCGGT 12815 |||| || |||||||||||||||||||| || || || | ||| || ||||| || Sbjct 37088 TGTGCTTCCTGATATGCGAGGCTGGACAATCAAGGGGAAACCCGCCAGCGGTCGTGCTGT 37147 Query 12816 GCTGTCGCAAGAACTGGACGGTAACAAATCGCACAGTCACAGCGCCAGAGCGCAGGATAC 12875 |||| || |||| ||| || | || ||||||| ||||| ||||| || | ||| Sbjct 37148 ATTGTCTCAGGAACAGGATGGAATTAAGTCGCACACCCACAGTGCCAGTGCATCCGGTAC 37207 Query 12876 CGACTTAGGGGCGAAAGCTACCTCATCCTTTGATTACGGCACGAA 12920 || || ||| ||||| | || || || ||||||||||| ||||| Sbjct 37208 GGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGGACGAA 37252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95023174003880