Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq2 102 3e-17 seq403 87.8 6e-13 seq462 80.6 9e-11 >seq2 Length=6328565 Score = 102 bits (112), Expect = 3e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 18116 CGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGA 18175 |||||| || || | || ||| |||| ||||| | || ||||| |||| |||| || Sbjct 2414360 CGGCAACCGCGTTCAGGAAATCACCGAAATCACGACTGGGCTGAAGGCGCTTGCCAAGGA 2414301 Query 18176 GCTCGATATCGCCG-TCGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGG 18234 ||| | | |||| || | ||| |||||||| || || || | | || | Sbjct 2414300 ACTCCAGGT-GCCGATCATCGCGCTTTCGCAGCTGTCCCGTCAGGTGGAAGCCCGCGACG 2414242 Query 18235 ATAAGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACA 18294 | || || || | | |||||||| || || |||||| |||||||||||||||||||| Sbjct 2414241 ACAAACGGCCGATGATGTCAGACCTGCGTGAATCCGGTTCGATCGAGCAGGACGCCGACG 2414182 Query 18295 TGATCGCGTTCTTGTTCCGTGAGGCCTACTACCTC 18329 ||||| |||| |||||||||| | ||||||||| Sbjct 2414181 TGATCCTGTTCGTGTTCCGTGAAGAATACTACCTC 2414147 >seq403 Length=83078 Score = 87.8 bits (96), Expect = 6e-13 Identities = 156/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 18116 CGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGA 18175 || ||| || || || || ||||||||||| || ||| ||||| | |||||| || Sbjct 51682 CGACAACCGAGTGAACGAAATCGCCGAGATTTCCATGGGCATGAAGGCCATCGCCAAGGA 51623 Query 18176 GCTCGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAG-CAG-TCGAGAGCAGAGAG 18233 | | ||| |||| || || |||||||| ||| | ||| | || ||| | ||| Sbjct 51622 ATTGAACATCCCCGTGGTCGCCCTCTCGCAGCTG--TCGCGTCAGGTGGAAAGCCGCGAG 51565 Query 18234 GATAAGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGAC 18293 || || || || | || || |||||||| || || || ||||||| ||||||||||| Sbjct 51564 GACAAACGCCCGCAGCTGTCGGACCTTCGGGAATCAGGCTCGATCGAACAGGACGCCGAT 51505 Query 18294 ATGATCGCGTTCTTGTTCCGTGAGGCCTACTACCTCGAACGCGA 18337 || | ||| ||||||| || | |||||| |||||||| Sbjct 51504 GTGGTGATGTTTGTGTTCCGCGAAGAATACTACAAGGAACGCGA 51461 >seq462 Length=61190 Score = 80.6 bits (88), Expect = 9e-11 Identities = 151/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18116 CGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGA 18175 || ||| || || | ||||||||||||||| || || | ||| || |||||| || Sbjct 7253 CGACAACCGCGTGCAGGAGATCGCCGAGATCTCCATGGGTCTCAAGGCGATCGCCAAGGA 7312 Query 18176 GCTCGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGGA 18235 ||| || ||||| | ||||| ||||| | || | || || ||| | || || Sbjct 7313 ACTCAGCATTCCCGTCATCGCCCTGTCCCAGCTGAGCCGGACGGTGGAAAGCCGCGAAGA 7372 Query 18236 TAAGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACAT 18295 || || || | || || |||||||| || || || ||||||| ||||| || ||| Sbjct 7373 CAAACGCCCGCAGCTGTCGGACCTTCGGGAATCGGGCTCGATCGAACAGGATGCGGACTG 7432 Query 18296 GATCGCGTTCTTGTTCCGTGAGGCCTACTACCTCGAACGCGA 18337 || |||| ||||||| || | || ||| | ||||| || Sbjct 7433 CGTCATGTTCGTGTTCCGCGAAGAATATTACGTGGAACGGGA 7474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162523387253176