Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 >seq1 Length=7344524 Score = 123 bits (136), Expect = 2e-23 Identities = 211/302 (70%), Gaps = 12/302 (4%) Strand=Plus/Minus Query 126070 TTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCA 126129 |||| ||||||||||| ||| | |||||||| ||||| ||||| | || || |||| Sbjct 588390 TTGC-TCCATATGATTATTATAGAGGTGTGCATCGCCAAAAGTATGGACAAAATCGCCCA 588332 Query 126130 CCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGA 126189 | || ||| | || | | || | | ||| || || || ||||| ||||| ||||| | Sbjct 588331 CTTCCAGTTCGCAAACCTGAGCTATCAAATGAGTGAGCAAGGCATAGCTTGCTATATTAA 588272 Query 126190 AAGGAACACCTAAAAATATATCAGCACTTCTTTGATATAATTGACAATTTAATTTACCCT 126249 |||| || || | ||||| ||||||| | || || | ||| || ||||| || | Sbjct 588271 AAGGTACCCCCAGAAATACATCAGCAGAACGCTGGTACAGTTGGCACGACAATTTCCCAT 588212 Query 126250 CTTGTACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAA---TGCCATTGA--AT---- 126300 | ||||||||||| || | ||||| || |||||||| |||| |||| || Sbjct 588211 CAGCCACGTAAAATTGGAAGAGGGTGTGACACGGTGGTAACCCTGCC-TTGACCATGCCG 588153 Query 126301 -CGATTTCAGTAGGATTCCATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGTTTTA 126359 ||| || | || ||||| || |||||||| || || ||||| | ||||| ||||| Sbjct 588152 GGGATATCCGGTGGGTTCCAGGCCGAAACAATATGCCGACGAGAATCCGGATTCTTTTTA 588093 Query 126360 AT 126361 || Sbjct 588092 AT 588091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408594754791524