Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq198 129 5e-25 seq19 84.2 2e-11 >seq198 Length=250510 Score = 129 bits (142), Expect = 5e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 6634 CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGAT-C 6692 ||||||||| ||||| || || ||||| |||||||| | |||||||| | || | | Sbjct 63963 CGTGAGCAGCGCGTAGGAGGCGATATTGAAAGGCACCCCGAGACCCATGTC-CGCGCTGC 64021 Query 6693 GTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGC 6752 | || || | |||||||||||||||||| | ||| ||||| || ||||||| |||||| Sbjct 64022 GCTGGTACATCTGGCAGGACAGCTCCCCCTCCGCCACGTAAAACTGGCAGAACATGTGGC 64081 Query 6753 ACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTC 6812 |||||||||| |||||| ||| ||| ||||||||| || | | ||||| || | Sbjct 64082 ACGGGGGGAGGGCCATCTTGCCGAGGTCCGACGGGTTCCAGGCAGAGAGTACGATTCTCC 64141 Query 6813 TGTCATCAGGGTT 6825 ||| || ||||| Sbjct 64142 GGTCCTCCGGGTT 64154 Score = 129 bits (142), Expect = 5e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 ||||| || ||| | || ||||| | | || ||||||||| ||| ||| |||| Sbjct 64154 AACCCGGAGGACCGGAGAATCGTACTCTCTGCCTGGAACCCGTCGGACCTCGGCAAGATG 64095 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639 || |||||||||||||||| ||||||| || ||||| ||| | ||||||||||||||| Sbjct 64094 GCCCTCCCCCCGTGCCACATGTTCTGCCAGTTTTACGTGGCGGAGGGGGAGCTGTCCTGC 64035 Query 34640 CAGCTCTATCAACG-ATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTA 34698 ||| | || || || | || | |||||||| | |||||||| ||||| || || || Sbjct 64034 CAGATGTACCAGCGCAGCGCG-GACATGGGTCTCGGGGTGCCTTTCAATATCGCCTCCTA 63976 Query 34699 CGCTCTGCTCACG 34711 ||| ||||||||| Sbjct 63975 CGCGCTGCTCACG 63963 Score = 100 bits (110), Expect = 3e-16 Identities = 154/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 6980 TCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCC 7039 || || || |||| || |||| |||||||||| | | ||||| | | |||| | Sbjct 65166 TCAAGGAACTCTCTCGATCCGTTCCCGTCCCAGATGTGGATCCCCCTGTCCTTGAGCACG 65225 Query 7040 TTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTAC 7099 || | ||| ||| || || ||||||||||||||||| | ||||| |||| || Sbjct 65226 TTTGCGTTGGTGCAGCCGGAAACAAACCACAGCAGCTCCTCCGCGACGCCGCGCCAGAAC 65285 Query 7100 ACACGTTTCGTCGTCAGCAGCGGAAA---TTCGCCCCGAAGGTTGTATCGGGCCTGTGTG 7156 || || || || || |||||||| || || ||| ||| || | || ||| | Sbjct 65286 ACGCGCTTGGTGGTGAGCAGCGGGAAGAGCTCCTCCCTCAGGCTGAAGCGCATCTGCACG 65345 Query 7157 CCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCC 7195 |||||| ||| ||||||||||||||||| ||||||||| Sbjct 65346 CCGAACTTGGACAGGGTCCCCGTCCCGGTGCGGTCCCCC 65384 Score = 100 bits (110), Expect = 3e-16 Identities = 154/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 34150 GGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCT 34209 ||||||||| ||||||||||||||||| ||| ||||||| ||| || | || ||| Sbjct 65384 GGGGGACCGCACCGGGACGGGGACCCTGTCCAAGTTCGGCGTGCAGATGCGCTTCAGCCT 65325 Query 34210 TCGGGGCGAA---TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGA 34266 ||| || || |||||||| || || || || |||| |||| ||||| | || Sbjct 65324 GAGGGAGGAGCTCTTCCCGCTGCTCACCACCAAGCGCGTGTTCTGGCGCGGCGTCGCGGA 65265 Query 34267 GGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGT 34326 ||||||||||||||| || || ||| ||| | || | |||| | | ||||| | Sbjct 65264 GGAGCTGCTGTGGTTTGTTTCCGGCTGCACCAACGCAAACGTGCTCAAGGACAGGGGGAT 65205 Query 34327 GAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGA 34365 | |||||||||| |||| || |||| || || || Sbjct 65204 CCACATCTGGGACGGGAACGGATCGAGAGAGTTCCTTGA 65166 >seq19 Length=1029424 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || ||||||| ||||||||||||||| ||||| ||||||||||| || | | Sbjct 785061 TGGGCAATCATGTGCGTGAGCAGAGCGTAGGAGGCAATATTGAACGGCACGCCCAGGAAC 785120 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 | ||| | || || |||||||||||||| ||| || | || |||||||| ||| Sbjct 785121 AGGTCGGCGCTGCGCTGGTAGAGCTGGCAGGAAAGCCTTCCGTCGGCCACGTAGAACTGG 785180 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 | ||| |||||| || | || ||||| Sbjct 785181 AACAGGCAGTGGCAAGGCGCCAGAGCCAT 785209 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 ||||| || | || |||||| ||| | ||| |||||||| || | || ||| ||| Sbjct 785209 ATGGCTCTGGCGCCTTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAGGCTTTCC 785150 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 ||||||||||| || || | ||| || | || ||||||||||| ||||| Sbjct 785149 TGCCAGCTCTACCAGCGCAGCGCCGACCTGTTCCTGGGCGTGCCGTTCAATATTGCCTCC 785090 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||||||||||||| ||||||| || || Sbjct 785089 TACGCTCTGCTCACGCACATGATTGCCCA 785061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258298399040