Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq53 100 2e-16 seq36 91.5 1e-13 seq63 84.2 2e-11 >seq53 Length=625924 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || ||| || || || |||| || ||||| Sbjct 125421 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGC 125480 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||| | ||| | || ||| |||||| ||| ||| Sbjct 125481 TTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 125540 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || || | || || | | ||| || | ||||||||| | |||||| | || ||||| Sbjct 125541 TGCTTCA-CGCCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGT 125599 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||||||||| Sbjct 125600 GAGGGTCTTGACGAAGATTTGCAT 125623 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || ||| || || || |||| || ||||| Sbjct 124737 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGC 124796 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||| | ||| | || ||| |||||| ||| ||| Sbjct 124797 TTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 124856 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || || | || || | | ||| || | ||||||||| | |||||| | || ||||| Sbjct 124857 TGCTTCA-CGCCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGT 124915 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 124916 GAGGGTCTTGACGAAGATCTGCAT 124939 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || ||| || || || |||| || ||||| Sbjct 124965 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGC 125024 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||| | ||| | || ||| |||||| ||| ||| Sbjct 125025 TTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 125084 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || || | || || | | ||| || | ||||||||| | |||||| | || ||||| Sbjct 125085 TGCTTCA-CGCCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGT 125143 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 125144 GAGGGTCTTGACGAAGATCTGCAT 125167 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || ||| || || || |||| || ||||| Sbjct 125193 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGC 125252 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||| | ||| | || ||| |||||| ||| ||| Sbjct 125253 TTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 125312 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || || | || || | | ||| || | ||||||||| | |||||| | || ||||| Sbjct 125313 TGCTTCA-CGCCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGT 125371 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 125372 GAGGGTCTTGACGAAGATCTGCAT 125395 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || ||| || || || |||| || ||||| ||||| || || || Sbjct 126095 TTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 126154 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-C 39215 || ||||||||||| | ||| | || ||| |||||| ||| ||||| || | || || | Sbjct 126155 AGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCGTC 126213 Query 39216 CACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | ||| || | ||||||||| | |||||| | || ||||| || || || || || Sbjct 126214 GATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTCACGAA 126273 Query 39276 GATTTGC 39282 || ||| Sbjct 126274 AATCTGC 126280 >seq36 Length=729648 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || ||| || || || |||| || ||||| ||||| ||||| || Sbjct 221026 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATC 220967 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-C 39215 ||||||||||| || | || | || ||| |||||| ||| ||||| || | || || | Sbjct 220966 AGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCGTC 220908 Query 39216 CACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | ||| || | ||||||||||| ||||| | || ||||| || || || || || Sbjct 220907 GATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 220848 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 220847 GATCTGCAT 220839 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || ||| || || || |||| || ||||| ||||| ||||| || Sbjct 221518 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATC 221459 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-C 39215 ||||||||||| || | || | || ||| |||||| ||| ||||| || | || || | Sbjct 221458 AGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCGTC 221400 Query 39216 CACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | ||| || | ||||||||||| ||||| | || ||||| || || || || || Sbjct 221399 GATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 221340 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 221339 GATCTGCAT 221331 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || || ||| || || || |||| || ||||| ||||| || || Sbjct 222014 CTCTTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 221955 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || ||||||||||| || | || | | ||| |||||| ||| ||||| || | || Sbjct 221954 GATCAGACGCTGCTGATCAGGCGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGC 221896 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 || | | ||| || | ||||||||||| ||||| | || ||||| || || || | Sbjct 221895 CGTCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 221836 Query 39272 CAAAGATTTGCAT 39284 | ||||| ||||| Sbjct 221835 CGAAGATCTGCAT 221823 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || ||| || || || |||| || ||||| ||||| || || || Sbjct 220537 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 220478 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-C 39215 ||||||||||| || | || | || ||| |||||| ||| ||||| || | || || | Sbjct 220477 AGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCGTC 220419 Query 39216 CACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | ||| || | ||||||||||| ||||| | || ||||| || || || || || Sbjct 220418 GATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 220359 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 220358 GATCTGCAT 220350 >seq63 Length=566113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||| || || || |||| || ||||| || || || || Sbjct 328856 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAA 328915 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | ||| | || ||| |||||| ||| ||| | || | || Sbjct 328916 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGGCTTCA-CGC 328974 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 || | | ||| ||| | || ||||| | |||||| | |||||||| || || || | Sbjct 328975 CGTCGATCGTGTCGGAGGGTTCTACGTCAAGCGTGATGGTCTTTCCCGTGAGGGTCTTGA 329034 Query 39272 CAAAGATTTGCAT 39284 | ||||| ||||| Sbjct 329035 CGAAGATCTGCAT 329047 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 ||||| ||||| || ||| || || || |||| || ||||| || || || || || Sbjct 329443 TTTTGGATATTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATC 329502 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-C 39215 || ||||||||||| | ||| | || ||| |||||| ||| || || || | || || | Sbjct 329503 AGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTATGCTTCA-CGCCGTC 329561 Query 39216 CACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | ||| || | ||||||||| | |||| | || ||||| || || || ||||| Sbjct 329562 GATCGTGTCCGAGGGCTCCACGTCAAGGGTGACGGTCTTGCCCGTGAGAGTCTTGACAAA 329621 Query 39276 GATTTGC 39282 ||| ||| Sbjct 329622 GATCTGC 329628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429541767916316