Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq36 125 5e-24 seq53 104 2e-17 seq63 86.0 4e-12 >seq36 Length=729648 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || || || Sbjct 221823 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 221882 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || ||| | ||||| ||||| Sbjct 221883 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCGCCTGATCAG 221942 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || ||||| |||| |||||| | |||| |||||| Sbjct 221943 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAAC 222002 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 222003 ATCCAGAAAGAGTCGAC 222019 Score = 109 bits (120), Expect = 4e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 23614 CAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGAC 23673 ||||||||||| || || |||||||| || || ||||| || || || || || ||||| Sbjct 219880 CAGATTTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTAGATGTCGAGCCCTCGGAC 219939 Query 23674 ACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAG 23733 || | || | || |||||||| ||||| || || | || || || || ||| Sbjct 219940 ACGATCGACGGCGTGAAGCAAAAAATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 219999 Query 23734 CGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATA 23793 ||| | || ||||||||||| || ||||| |||| |||||| | |||| |||||||| Sbjct 220000 CGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAACATC 220059 Query 23794 CAAAA 23798 || || Sbjct 220060 CAGAA 220064 Score = 109 bits (120), Expect = 4e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || || || Sbjct 220839 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 220898 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || || | ||||| ||||| Sbjct 220899 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 220958 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || ||||| |||| ||||| | |||| |||||| Sbjct 220959 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAAC 221018 Query 23791 ATACAAAA 23798 || || || Sbjct 221019 ATCCAGAA 221026 Score = 109 bits (120), Expect = 4e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || || || Sbjct 221331 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 221390 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || || | ||||| ||||| Sbjct 221391 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 221450 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || ||||| |||| ||||| | |||| |||||| Sbjct 221451 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAAC 221510 Query 23791 ATACAAAA 23798 || || || Sbjct 221511 ATCCAGAA 221518 Score = 105 bits (116), Expect = 5e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || || || Sbjct 220350 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 220409 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || || | ||||| ||||| Sbjct 220410 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 220469 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || ||||| |||| ||||| | |||| |||||| Sbjct 220470 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAAC 220529 Query 23791 ATACAAAA 23798 || || || Sbjct 220530 ATCCAGAA 220537 >seq53 Length=625924 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || || || Sbjct 124939 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 124880 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || || | || || || || Sbjct 124879 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 124820 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || ||||| |||| ||||| | |||| |||||| Sbjct 124819 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAAC 124760 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 124759 ATCCAGAAGGAGTCGAC 124743 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || || || Sbjct 125167 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 125108 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || || | || || || || Sbjct 125107 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 125048 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || ||||| |||| ||||| | |||| |||||| Sbjct 125047 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAAC 124988 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 124987 ATCCAGAAGGAGTCGAC 124971 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || || || Sbjct 125395 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 125336 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || || | || || || || Sbjct 125335 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 125276 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || ||||| |||| ||||| | |||| |||||| Sbjct 125275 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAAC 125216 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 125215 ATCCAGAAGGAGTCGAC 125199 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||||||||| || || ||||| ||||| || || || || Sbjct 125623 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 125564 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || || | || || || || Sbjct 125563 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 125504 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || ||||| |||| ||||| | |||| |||||| Sbjct 125503 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAAC 125444 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 125443 ATCCAGAAGGAGTCGAC 125427 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 |||||||||||| || ||||| ||||| || || ||||| ||||| || || || |||| Sbjct 126280 GCAGATTTTCGTGAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCGGA 126221 Query 23673 CACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACA 23732 ||| | || | || || || || ||||| || || | || || || || || Sbjct 126220 CACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCA 126161 Query 23733 GCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACAT 23792 ||| | || || |||||||| || ||||| |||| ||||| | |||| |||||||| Sbjct 126160 GCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAACAT 126101 Query 23793 ACAAAA 23798 || || Sbjct 126100 CCAGAA 126095 >seq63 Length=566113 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||||||||| || ||||| || || || || || | Sbjct 329047 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACGCTTGACGTAGAACCCTCC 328988 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || | || || ||||| || || | || || || || Sbjct 328987 GACACGATCGACGGCGTGAAGCCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 328928 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || ||||| |||| ||||| | |||| |||||| Sbjct 328927 CAGCGCCTGATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAAC 328868 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 328867 ATCCAGAAGGAGTCGAC 328851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006584531856