Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq198 116 3e-21 seq19 89.7 4e-13 >seq198 Length=250510 Score = 116 bits (128), Expect = 3e-21 Identities = 147/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 29740 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCT 29799 |||||| || | |||| |||||| || || ||||||||||| ||||||||| | | Sbjct 63963 CGTGAGCAGCGCGTAGGAGGCGATATTGAAAGGCACCCCGAGACCCATGTCCGCGCTGCG 64022 Query 29800 CTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGAC---ACATGGCATG 29856 |||||| | |||||| || ||||| || || |||||||||||| | ||||| || Sbjct 64023 CTGGTACATCTGGCAGGACAGCTCCCCCTCCGCCACGTAAAACTGGCAGAACATG---TG 64079 Query 29857 GCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCG 29916 |||||| || |||||||| || | ||| |||||||||||| | | | ||| | Sbjct 64080 GCACGGGGGGAGGGCCATCTTGCCGAGGTCCGACGGGTTCCAGGCAGAGAGTACGATTCT 64139 Query 29917 CCTGTCTTCTGGGTTGTTCCT 29937 || ||| || |||||| |||| Sbjct 64140 CCGGTCCTCCGGGTTGGTCCT 64160 Score = 98.7 bits (108), Expect = 8e-16 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 30092 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 30151 || ||||| || ||||| |||||||||| | | |||| | || |||| | || | | Sbjct 65172 AACTCTCTCGATCCGTTCCCGTCCCAGATGTGGATCCCCCTGTCCTTGAGCACGTTTGCG 65231 Query 30152 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30211 || ||| | || || |||||||||||||||||| ||||| | ||| || || | | Sbjct 65232 TTGGTGCAGCCGGAAACAAACCACAGCAGCTCCTCCGCGACGCCGCGCCAGAACACGCGC 65291 Query 30212 TTGGTCGTGAGGAG-GGGA--AACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAAC 30268 ||||| ||||| || |||| | || || | |||| | | | | ||| || ||| Sbjct 65292 TTGGTGGTGAGCAGCGGGAAGAGCTCCTCCCTCAGGCTGAAGCGCATCTGCACGCCGAAC 65351 Query 30269 ATGGACAAGACTCCCGTGCCTGTCCTGTCTCCCCTGCGTTTGCCGTTTTCCACGACGT 30326 |||||| | ||||| || || | ||| |||||||| ||||||||||| || || Sbjct 65352 TTGGACAGGGTCCCCGTCCCGGTGCGGTCCCCCCTGCGCACGCCGTTTTCCAGGATGT 65409 >seq19 Length=1029424 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 || || ||||||| |||||| |||| |||| ||| || || || ||||| || || | Sbjct 785061 TGGGCAATCATGTGCGTGAGCAGAGCGTAGGAGGCAATATTGAACGGCACGCCCAGGAAC 785120 Query 29786 ATGTC--CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACT 29843 | ||| | ||| | ||||||||||||||| || ||| ||||||| |||||| |||| Sbjct 785121 AGGTCGGCGCTG--CGCTGGTAGAGCTGGCAGGAAAGCCTTCCGTCGGCCACGTAGAACT 785178 Query 29844 GACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCC 29881 | ||| |||| ||||| || | || |||||| | ||| Sbjct 785179 GGAACA-GGCAGTGGCAAGGCGCCAGAGCCATGCGGCCC 785216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406159576516552