Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 203 3e-47 >seq1 Length=7344524 Score = 203 bits (224), Expect = 3e-47 Identities = 584/893 (65%), Gaps = 14/893 (2%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| || ||||| ||| || |||||||||||||| || ||||| ||||| || Sbjct 2684368 ACACCACTCTTCTGGTAGTCGCCCACGCGCTTTTCGAAGAAGTTGGTTTTACCTTCCAAA 2684309 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 || || ||||| | || || || | ||||| | || || ||| || Sbjct 2684308 GAGATCAGGTCCATCCATGGGAATGGGTTCTCTACGTTGAAGATCTTATCGTGCTTCAGC 2684249 Query 4368 GCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATT 4427 ||||| |||| ||||| |||||||| || || ||||||| ||| || ||| || || Sbjct 2684248 GCTACCAGCAGGCGGTCGGCTACAAACTCGATGTACTGGCACATCAGGTCGGCATTCATA 2684189 Query 4428 CCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCT 4487 ||||| | || || || || || | || | ||| || | ||| || |||||| | Sbjct 2684188 CCAATCAGTCCTACGGGGAGGGCATCCGTTACAAATTCCTTTTCAATTTCTACGGCATTG 2684129 Query 4488 GTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA---ACAAT 4544 | || ||| || | | ||||||| | | | || | | | || || ||| Sbjct 2684128 GCAATAATACCTCTCACCGTATCTTTTGGTAGCTTGTGGATGATGTGATCATTGTACAGC 2684069 Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| ||||| ||||| |||| ||| || || | ||| |||| || ||||| || | Sbjct 2684068 AAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAGAGAAGCTC 2684009 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | || ||||| ||||| | ||| || | ||| || || | || || ||||||||| Sbjct 2684008 AGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAACCAGAAAAG 2683949 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || || || || || || ||||| || | | || |||| || | | || || Sbjct 2683948 AAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAAGGAAC---CATTCTC- 2683893 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 |||||| || ||||| | ||||||||||| ||||| | || | || ||| Sbjct 2683892 --AATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGATGGCG 2683835 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 || || | | |||||| || ||||| |||||| ||||| || || ||| || Sbjct 2683834 TTGAACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGGAGTAA 2683775 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT- 4903 | || || || ||||| || || |||||||| ||||| ||| || | || || || Sbjct 2683774 GTCTCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCTCCGTA 2683715 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 |||| | || | |||||| | | || | | ||| |||||||| || |||||| ||| Sbjct 2683714 TACTGTACCTCGGCTACAAAGT-TCTCCGCCAGGTTCTCGTTTACGATCCCGTCAGAGGC 2683656 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTT---TTTT 5020 |||||||| |||| ||||| ||| |||| | || || || |||| | || Sbjct 2683655 CGCAAAAAAGGCCAGTACATGTTTTATGAAGTGACGCTCATCGTCGTTTAGTTTGCTATT 2683596 Query 5021 CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 ||| | || || |||| | | |||| || || ||||||| || | ||||||| Sbjct 2683595 CCAATCGGTCAGGTCTTGGCTCAGGTCAATCTCCTCCGCAGTCCAGAAACAGGCTTCCGA 2683536 Query 5081 TTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATC 5133 || || || | ||| || ||| || ||| || || | | ||||||| Sbjct 2683535 CTTCTTATATTCGGCCCAGATGTCATCATGCTGGATGGGGAAGAGAACAAATC 2683483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427045790183756