Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq198 100 2e-16 >seq198 Length=250510 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27234 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 27293 |||||| || | |||| |||||| || || || |||||||| ||||||||| | | Sbjct 63963 CGTGAGCAGCGCGTAGGAGGCGATATTGAAAGGCACCCCGAGACCCATGTCCGCGCTGCG 64022 Query 27294 CTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCA 27353 |||||| | ||| || || ||||| || || ||||||||||| || | |||||| Sbjct 64023 CTGGTACATCTGGCAGGACAGCTCCCCCTCCGCCACGTAAAACTGGCAGAACATGTGGCA 64082 Query 27354 CGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCT 27413 ||| || || ||||| ||| | ||| ||||||||||| | | | ||| | || Sbjct 64083 CGGGGGGAGGGCCATCTTGCCGAGGTCCGACGGGTTCCAGGCAGAGAGTACGATTCTCCG 64142 Query 27414 GTCTTCTGGGTTGTTCCT 27431 ||| || |||||| |||| Sbjct 64143 GTCCTCCGGGTTGGTCCT 64160 Score = 95.1 bits (104), Expect = 9e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 27454 AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAA 27513 ||||| || |||||| |||||| |||||| | |||||| ||||| || || || || Sbjct 64664 AGCTGGTCGACCCCCTTCCCCGTGTAGTCGGCGTGCATGTCGGTGTATTCGGCGCCAAAG 64723 Query 27514 TGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 27573 |||||||| || || |||||||||||||| ||||| || || ||||| | | || |||| Sbjct 64724 TGCCTCCACTGAAAGCCGTACACCGGTCCGAGGTCGCCTTCCTCCCTCTCCGTGAGGCCC 64783 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 27586 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 27645 || ||||| || ||||| |||||||||| | | |||| | || |||| | || | | Sbjct 65172 AACTCTCTCGATCCGTTCCCGTCCCAGATGTGGATCCCCCTGTCCTTGAGCACGTTTGCG 65231 Query 27646 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 27705 || ||| | || || |||||||||||||||||| ||||| | ||| || || | | Sbjct 65232 TTGGTGCAGCCGGAAACAAACCACAGCAGCTCCTCCGCGACGCCGCGCCAGAACACGCGC 65291 Query 27706 TTGGTCGTGAGGAG-GGGA--AACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAAC 27762 ||||| ||||| || |||| | || || | |||| | | | ||| || ||| Sbjct 65292 TTGGTGGTGAGCAGCGGGAAGAGCTCCTCCCTCAGGCTGAAGCGCATCTGCACGCCGAAC 65351 Query 27763 ACGGACAAGACTCCCGTGCCCGTCCTGTCTCCCCTGCGTTTACCGTTTTCCAAGACGT 27820 ||||| | ||||| || || | ||| |||||||| |||||||||| || || Sbjct 65352 TTGGACAGGGTCCCCGTCCCGGTGCGGTCCCCCCTGCGCACGCCGTTTTCCAGGATGT 65409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369503903533892