Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq19 150 6e-32 seq5 111 5e-20 seq2 104 7e-18 >seq19 Length=1029424 Score = 150 bits (166), Expect = 6e-32 Identities = 197/271 (73%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 33920 CGCCCGGAGCGAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGACAGTGC 33979 |||| | || || | ||||||| | |||||| || | || || |||| ||||| Sbjct 739135 CGCCGTGGGCCAGGTCCTCGAATTTGGTGTACTTGCCGATAAAGGCCAGGCGGATAGTGC 739194 Query 33980 T--TGGCTCGCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGT 34037 ||| |||||| || ||||| | ||||| | ||| || | ||| || | | || Sbjct 739195 CGATGGG--GCCGTTCCGCTGCTTGCCAATGATGATCTCGGCAATGCCCTTGTCCGGCGT 739252 Query 34038 GTCCGGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGAT 34097 ||| || ||||||||| || |||||||| |||||||| |||||||||||||||||||| Sbjct 739253 GTCTTCGTTATAGACCTCATCCCGGTACACAAACATGATGACGTCGGCGTCCTGCTCGAT 739312 Query 34098 CGCCCCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGA 34157 || || || || || || || || | | ||| |||||||| ||||||||||| || Sbjct 739313 GGCGCCCGATTCCCGTAGATCGGAGTTAACCGGGCGCTTGTTGGGCCGCTGCTCAAGACT 739372 Query 34158 GCGGTTGAGCTGCGACAGCACGATCACGGGG 34188 ||||||||||| |||||| | | ||| ||| Sbjct 739373 CCGGTTGAGCTGGGACAGCGCCACCACCGGG 739403 >seq5 Length=3486096 Score = 111 bits (122), Expect = 5e-20 Identities = 177/250 (71%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 33940 AATCGCGAGTACTTACCCAGGAACGCGCACCGGACAG-TGCTTGGCTCGCCGTTGCGGTG 33998 |||| | ||||| |||| ||||| ||| ||||| ||| ||||||||| || || Sbjct 203941 AATCTGGTGTACTCACCCTGGAACT-GCAGACGACAGGTGCCAATCTCGCCGTTTCGCTG 203883 Query 33999 CTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGATAGACCTCGTC 34058 || | | || | ||| || | || || | | | ||| || ||| ||| || Sbjct 203882 TTTGCCCAGAATAATCTCGGCAATACCTTTGTCCGGACTTTCCTCGTTGTAGTACTCATC 203823 Query 34059 TCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGCAGGTC 34118 || || | |||| ||| ||||||||||| ||||| ||||| || || || || || || Sbjct 203822 GCGATAAATAAACAGGATAACGTCGGCGTCTTGCTCAATCGCACCTGATTCTCGAAGATC 203763 Query 34119 CGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGACAGCAC 34178 ||| |||| || |||||||| ||||||||||||| | ||||| |||||||| ||| | Sbjct 203762 CGAATTCATTGGACGCTTGTTTGGCCGCTGCTCCACGCCACGGTTTAGCTGCGAGAGCGC 203703 Query 34179 GATCA-CGGG 34187 |||| |||| Sbjct 203702 AATCATCGGG 203693 >seq2 Length=6328565 Score = 104 bits (114), Expect = 7e-18 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 34054 TCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGC 34113 || || ||| ||||||||| |||||||||||||||||||||||||| ||||| || ||| Sbjct 2414157 TCTTCACGGAACACGAACAGGATCACGTCGGCGTCCTGCTCGATCGAACCGGATTCACGC 2414216 Query 34114 AGGTCCGACATCATCGGTCGCTTGT 34138 ||||| ||||||||||| || |||| Sbjct 2414217 AGGTCTGACATCATCGGCCGTTTGT 2414241 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 34575 GGCGATGTTGATCGCCAGCGCGGTCTTGCCCATTGCAGGACGGCCAGCAATCACGACCAT 34634 |||||||||| | ||||||| ||| ||||||||||||||||| || |||| ||||| || Sbjct 2414726 GGCGATGTTGGTTGCCAGCGAGGTTTTGCCCATTGCAGGACGTCCGGCAAGCACGATCAG 2414785 Query 34635 GTCGCCAGGCTTCAGACC 34652 |||| | ||| |||||| Sbjct 2414786 GTCGGAATGCTGCAGACC 2414803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160462605166680