Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq244 443 1e-119 seq2 313 1e-80 >seq244 Length=185980 Score = 443 bits (490), Expect = 1e-119 Identities = 645/904 (71%), Gaps = 17/904 (2%) Strand=Plus/Plus Query 78266 TGGGATCGACTCACCGGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATC 78325 ||| | || || || | |||||||||||||| ||||| || ||| ||||||| || || Sbjct 85000 TGGAACCGTCTGACGGTAAACTTCTGGTTGCCGGAGAAAGTGCCGCTGTCCAATGATATT 85059 Query 78326 CCATCCTGGGACACC-CTTACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACCGG 78384 | || ||| ||| || || ||||| || || || || || || ||||||||||| Sbjct 85060 CAGTCTTGGT-CACAGCTGACCCCGGACGAACAGACCCTGACCATTCGGGTGTTCACCGG 85118 Query 78385 CCTCACCCTGCTCGACACCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGC 78444 ||| || || |||||||| |||||| | || || || |||| || || || Sbjct 85119 CCTGACGCTACTCGACACGATCCAGAATGCCGTGGGTGCGCCGACGCTGATGCAGGATGC 85178 Query 78445 CAACACCCCGCACGAGGAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGC 78504 | ||||||||| || ||||||||||| | ||| ||||| || |||||| |||| || || Sbjct 85179 GATCACCCCGCATGAAGAGGCGGTGCTTAGCAATATCGCCTTTATGGAGGCGGTGCATGC 85238 Query 78505 CAAGTCCTACAGCTCGATCTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGGCGTT 78564 |||||| |||| | ||||| || || || ||| || | || || || || Sbjct 85239 GCGGTCCTATTCCTCGGTGTTCTCGACCCTGTGTCAAACCACTGAGGTGGATGAAGCCTT 85298 Query 78565 CCGTTGGTCGGAGGAGAACGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTACTA 78624 ||| ||||||| |||||| ||| | |||||| ||| ||| | | |||| ||| | || Sbjct 85299 CCGCTGGTCGGCGGAGAATGAGCATCTGCAGGCCAAATCCCGGCTGATCCTTGACGAATA 85358 Query 78625 CCGCGGCGACGACCCCTTGAAGCG---GAAGGTGGCCAGTACGCTCCTGGAGGGCTTCCT 78681 | | | || | | | ||| |||| | ||||| | |||| ||| ||||| | Sbjct 85359 CGATGCCACCGCCTCGCCGCTGCGCAAGAAGATCGCCAGCGTGTTCCTTGAGAGCTTCTT 85418 Query 78682 CTTCTACTCGGGCTTCTACCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACAC 78741 ||||| |||||||| || ||||| ||| ||||||| |||||||| ||||| ||||| Sbjct 85419 GTTCTATTCGGGCTTTTATCTGCCAATGCACTGGTCAAGCCGCGCGCGCCTGACCAACAC 85478 Query 78742 CGCGGACGTGATCCGGTTGATTATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATA 78801 || ||| ||||||| |||| ||||| || ||||| | || || || |||||||| || Sbjct 85479 TGCCGACCTGATCCGCCTGATCATCCGCGATGAAGCCATCCACGGCTATTACATCGGCTA 85538 Query 78802 CAAGTACCAGCGAGGCCTCGAGACCCAGGGGCCGGCGCGGCAGGCT--GAGCTCAAGGAG 78859 |||| |||||| ||| | ||| | | || |||| | || || || ||||| Sbjct 85539 TAAGTTCCAGCGCGGCATGGAG--CGTTTGAACGAGGCGGAACGCAAGGAACTGAAGGAT 85596 Query 78860 TACACGTTCGATCTGCTCTCGGAGCTCTACGACAACGAGTGTGACTACACCGAGCAGCTC 78919 | | || | | |||| | || || || |||| ||| ||| || ||||||||| Sbjct 85597 TTTGCCTTTGGTTTGCTGTTTGACCTTTATGACATTGAGGCGCGCTATACAGAGCAGCTC 85656 Query 78920 TATGACGACGTCGGACTCACCGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAAG 78979 ||||| | | || ||||| |||||||| ||||| ||||||| |||||||| ||||||| Sbjct 85657 TATGATGGGTTGGGGCTCACTGAGGATGTGAAGAACTTCCTGCACTACAACGCCAACAAG 85716 Query 78980 GCGCTGATGAACCTCGGCTACGAAGCACTGTTCCCCAAGGAAGAGACCA----TGGCAGA 79035 || ||| ||||||||| | || || ||||| || |||||||||| || | | Sbjct 85717 GCCCTGCAGAACCTCGGATTTGAGGCGCTGTTTCC---GGAAGAGACCTGCCGTGTGA-A 85772 Query 79036 CCCGGCCATCATGTCCGCGCTCTCACCAGGCGGCGACGAGAACCACGACTTCTTCTCCGG 79095 |||||| |||||| | ||||| || || || || || |||||||||||||||||||| Sbjct 85773 CCCGGCGATCATGGCGGCGCTGTCGCCCGGATCGGATGAAAACCACGACTTCTTCTCCGG 85832 Query 79096 GTCGGGCTCGAGCTACGTCATCGGCAAAGCTGAAGCCACGGCAGATGAGGACTGGGACTT 79155 || ||||| ||||| || |||||||| || |||||||| | ||| || |||||||| || Sbjct 85833 TTCCGGCTCAAGCTATGTGATCGGCAAGGCAGAAGCCACAGAAGACGAAGACTGGGATTT 85892 Query 79156 CTGA 79159 |||| Sbjct 85893 CTGA 85896 >seq2 Length=6328565 Score = 313 bits (346), Expect = 1e-80 Identities = 654/960 (68%), Gaps = 31/960 (3%) Strand=Plus/Plus Query 78213 TCACCAAGGCCATCAACTGGAACA-AGGTCAC--CGACGAGGTCGACGACACCGTGTGGG 78269 || |||||||| ||||||||||| | ||| |||| ||| || | | ||| Sbjct 3371516 TCCCCAAGGCCGTCAACTGGAACCGACTTCAGGACGACAAGGATCTGGAAATC---TGGA 3371572 Query 78270 ATCGACTCACCGGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATCCCAT 78329 | || || || | ||| |||||| | || || || || || |||| || ||||| | | Sbjct 3371573 ACCGCCTGACTGTCAATTTCTGGCTCCCGGAAAAAGTTCCCCTGTCGAATGACATTCAAA 3371632 Query 78330 CCTGGGACACCCTT-ACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACCGGCCTC 78388 |||| || || |||| ||| ||| | |||| || || || || || ||||| | Sbjct 3371633 GTTGGGCGACGCTGCACGC-GGATGAGCGGCAACTGACAATCCGCGTCTTTACCGGATTG 3371691 Query 78389 ACCCTGCTCGACACCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAAC 78448 || || || |||||||| || || || || || || | || | ||||| Sbjct 3371692 ACACTTCTGGACACCATTCAAAATACGGTCGGTGCTCCAGCGTTGATGACAGACGCGCTG 3371751 Query 78449 ACCCCGCACGAGGAGGCGGTGCTCACCAACATCGCGTTCATGGA----GTCGGTACACGC 78504 || ||||| || ||||| || || |||||||| ||||||||||| ||| | ||||| Sbjct 3371752 ACGCCGCATGAAGAGGCAGTTCTAACCAACATAGCGTTCATGGAAGCTGTCCATGCACGC 3371811 Query 78505 CAAGTCCTACAGCTCGATCTTCTCAACGCTATGCT---CCTCCAAGCAGATTGACGAGGC 78561 || ||| || ||||||| || || ||| | ||| || ||||||| || Sbjct 3371812 --AG--CTATTCTTCCGTCTTCTCGACACTCTGCCAGACGTCCGAGG---TTGACGATGC 3371864 Query 78562 GTTCCGTTGGTCGGAGGAGAACGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTA 78621 |||||| |||||||||||||| |||| || ||| || | ||| | | ||| || | Sbjct 3371865 GTTCCGCTGGTCGGAGGAGAATGAGTTTCTTCAGGCAAAATCACAGCTGATTCTGAACGA 3371924 Query 78622 CTAC--CGCGGCGACGACCCC-TTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCTT 78678 || ||| || | | || |||||| |||||| ||||| | || ||| | || Sbjct 3371925 ATATGACGCTGCTTCTTCACCGTTGAAGAAGAAGGTCGCCAGCGTCTTTCTTGAGAGTTT 3371984 Query 78679 CCTCTTCTACTCGGGCTTCTACCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAA 78738 || ||||||||||||||||| ||||| ||| | ||||| ||||| || ||||| || || Sbjct 3371985 TCTGTTCTACTCGGGCTTCTATCTGCCCATGCATTGGTCCAGCCGTGCAAAGCTCACCAA 3372044 Query 78739 CACCGCGGACGTGATCCGGTTGATTATCCGAGACGAAGCAGTTCATGGGTACTACATCGG 78798 ||| ||||| ||||||| |||| || || || ||||| || ||||| ||||| ||||| Sbjct 3372045 CACTGCGGATCTGATCCGCCTGATCATTCGCGATGAAGCGGTGCATGGCTACTATATCGG 3372104 Query 78799 ATACAAGTACCAGCGAGGCCTCGAGACCCAGGGGCCGGCGCGGCAGGCTGAGCTCAAGGA 78858 ||||||| ||||| || ||||| | || ||| || | ||| ||||||| Sbjct 3372105 TTACAAGTTTCAGCGGATGCTGGAGACGCTTGGCGAAGCGGAGCGTGACGAGATCAAGGA 3372164 Query 78859 GTACACGTTCGATCTGCTCTCGGAGCTCTACGACAACGAGTGTGACTACACCGAGCAGCT 78918 | | || | ||| | | || || ||||||| ||| | || ||||| || Sbjct 3372165 TTTTGCATTTGCTCTAATGTTCGACCTTTACGACATAGAGAGCCGATATACCGAAAGCCT 3372224 Query 78919 CTATGACGACGTCGGACTCACCGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAA 78978 ||| || ||| || || ||||| || || ||| | ||||||| |||||||| ||||| Sbjct 3372225 CTACGATCGCGTAGGCCTTACCGAAGACGTGAAGCATTTCCTGCACTACAACGCGAACAA 3372284 Query 78979 GGCGCTGATGAACCTCGGCTACGAAGCACTGTTCCCCAAGGA-AGAGAC--CATGGCAGA 79035 ||| ||||||| || |||||||| || || || || ||| || | | | || | | Sbjct 3372285 GGCATTGATGAATCTTGGCTACGAGGCCCTTTTTCC---GGACAGTGTCTGCCAGGTAAA 3372341 Query 79036 CCCGGCCATCATGTCCGCGCTCTCACCAGGCGGCGACGAGAACCACGACTTCTTCTCCGG 79095 ||| || |||||| ||||||| || || | || ||||| || ||||| || || || Sbjct 3372342 CCCCGCAATCATGGCCGCGCTTTCTCCCAATGCAGATGAGAATCATGACTTTTTTTCAGG 3372401 Query 79096 GTCGGGCTCGAGCTACGTCATCGGCAAAGCTGAAGCCACGGCAGATGAGGACTGGGACTT 79155 || |||||| || || |||||||| || | || || | ||| | |||||||| || Sbjct 3372402 ATCCGGCTCGTCTTATGTTATCGGCAAGGCGGTCGCGACCGAAGACGTAGACTGGGATTT 3372461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299318929677176