Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq19 123 4e-23 seq562 113 6e-20 seq4 107 3e-18 seq5 102 1e-16 seq201 86.0 9e-12 >seq19 Length=1029424 Score = 123 bits (136), Expect = 4e-23 Identities = 225/326 (69%), Gaps = 10/326 (3%) Strand=Plus/Minus Query 99857 TCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCGTTTAATATTGCG 99916 || || ||||| || || ||||||||||| ||||| | || |||||||| |||||||| Sbjct 785152 TCCTGCCAGCTCTACCAGCGCAGCGCCGACCTGTTCCTGGGCGTGCCGTTCAATATTGCC 785093 Query 99917 TCATACGCTTTGTTGATCCACATGTTTGCACAGCAGGCTAACATGACCGTGGGTGATTTC 99976 || |||||| || | | |||||| |||| || ||| || || || || || ||| Sbjct 785092 TCCTACGCTCTGCTCACGCACATGATTGCCCAACAGTGCGACCTGGAGGTTGGAGAGTTC 785033 Query 99977 GTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTG---GAACAAACCCGTACC 100033 || | || ||| || |||||| | ||||||||| || | | | | Sbjct 785032 GTGCATACCTTCGGCGACTGTCACCTGTACCAGAACCATCTGACCGATGACATCGTCTTC 784973 Query 100034 ---CAGTT--AGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTAAGCCAG 100088 ||||| || | |||||||| |||| || | |||| | |||||||| ||||| | Sbjct 784972 GAGCAGTTGAAGCGCAAGCCCCGCG--CGTTGCCGACGCTGGTGATCAAACGCAAGCCCG 784915 Query 100089 ACTCCATCTTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGACCCGCATCCTG 100148 | ||||||||| || || | || |||||||| |||| || || ||||||||||| | Sbjct 784914 AGAGCATCTTCGAGTACGAGCTGGAGGACTTCGAGTTTGAGGGGTATGACCCGCATCCGG 784855 Query 100149 CAATCAAAGCACCGGTCGCGATATGA 100174 ||||| || ||| | || || ||| Sbjct 784854 GCATCAAGGCGCCGATTGCCATCTGA 784829 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 99202 AGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCA 99261 ||||||||| || ||| |||| ||| | ||||| | |||||| |||||||| ||||| Sbjct 785612 AGACCGTACCGGTGTCGGCACCCGGTCGGTGTTCGGCCGCCAGATCCGTTTCAACCTGCA 785553 Query 99262 AGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCACGAACT 99321 ||||||||||| ||||| || || ||| ||| |||| |||||| | ||| | Sbjct 785552 GGAAGGCTTTCCCCTGGTGACCACCAAGAAGGTCCACCTGCGCAGCATTATTTATGAATT 785493 Query 99322 GCTGTGGTTCCT 99333 ||| ||||| || Sbjct 785492 GCTCTGGTTTCT 785481 >seq562 Length=35438 Score = 113 bits (124), Expect = 6e-20 Identities = 173/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGG---GCACCAGATGCGTTTCAATCTG 99259 ||||| || || || || ||| |||| |||||| ||| ||| || | |||| Sbjct 12945 GACCGCACCGGTACGGGCACCTTGTCGTGTTTCGGCATGCAACAG---CGCTATGATCTT 13001 Query 99260 CAAGAAGGCTTTCCGCTGGTAACGACTAAGCG-CTGTCACATGCGTTCGATTATTCACGA 99318 || ||||| ||||| || || || || ||| ||| |||| || || |||||||| Sbjct 13002 GCCGATGGCTTCCCGCTCGTCACCACGAAAAAACTG-CACCTGCGCTCCATCATTCACGA 13060 Query 99319 ACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAAC 99378 || |||||||| || ||||||||||| ||||||| | || || |||||||| | Sbjct 13061 GCTTCTGTGGTTTTTGTCCGGCGATACCAACATCAAATACCTGAAAGACAATGGTGTTTC 13120 Query 99379 TATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTG 99438 || |||||||| ||| | | || |||||||||| || ||||| || ||| | ||||| Sbjct 13121 GATCTGGGACGAGTGGGCGGATGAAAATGGCGACCTTGGGCCGGTCTATGGTTACCAGTG 13180 Query 99439 GCG 99441 ||| Sbjct 13181 GCG 13183 >seq4 Length=3599618 Score = 107 bits (118), Expect = 3e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 99202 AGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCA 99261 |||||| ||||| || || || || || | ||||| | |||| || | | |||||| Sbjct 201492 AGACCGCACGGGCACTGGCACACTCTCCGTCTTCGGTCGCCAGGCCCGCTACGATCTGCG 201551 Query 99262 AGAAGGCTTTCCGCTGG-TAACGACTAAGC-GCTGTCACATGCGTTCGATTATTCACGAA 99319 || || ||||| ||| |||| || ||| ||| ||| | || || || || ||||| Sbjct 201552 TGAGGGATTTCC-CTGCCTAACCACAAAGAAGCT-TCATCTCCGCTCAATCATCCACGAG 201609 Query 99320 CTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACT 99379 |||||||||||||| ||||| || ||||| ||| || | || || || || || || Sbjct 201610 CTGCTGTGGTTCCTCAAAGGTGACACCAACATCACCTACCTGAAGGAAAACGGCGTCACC 201669 Query 99380 ATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGG 99429 || |||||||||||| | | || | || |||||||| || || ||||| Sbjct 201670 ATCTGGGACGAATGGGCGGATGAAAACGGGGACCTCGGCCCCGTCTACGG 201719 >seq5 Length=3486096 Score = 102 bits (112), Expect = 1e-16 Identities = 181/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 99185 GAAGGCGTGCCGAAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAG 99244 ||||| |||| || ||||||| || || || || || || | || || | ||| Sbjct 3432947 GAAGGTGTGCATAAAGAAGACCGAACCGGCACAGGGACGCTCAGCGTGTTTGGCTATCAG 3433006 Query 99245 ATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGT 99304 |||||||| ||||| | || ||||| |||| || ||||| || || | || Sbjct 3433007 ATGCGTTTTGATCTGGCTCAGGGGTTTCCATTGGTCACCACTAAAAAGTGCCATCTCCGC 3433066 Query 99305 TCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAAT 99364 || |||||||| || ||||| ||||| || | ||| |||||| || || || || Sbjct 3433067 TCTATTATTCATGAGCTGCTTTGGTTTCTTCAGGGCAGCACCAATATCGCCTACTTGAAC 3433126 Query 99365 GATAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTA 99424 |||||||| || | |||||||| || ||| | |||| || || || || |||||| Sbjct 3433127 GATAATGGCGTCAAGATTTGGGATGATTGGGCAACTGAAGAAGGTGAGCTTGGCCCGGTA 3433186 Query 99425 TACGGTAAACAGTGGCGGTCTTGG 99448 || || | |||||||| || ||| Sbjct 3433187 TATGGGGAGCAGTGGCGATCCTGG 3433210 >seq201 Length=246981 Score = 86.0 bits (94), Expect = 9e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGCG-CTGTCACATGCGTTCGATTATTCACGAACT 99321 || ||||| || ||||| || || ||| ||| ||| || || || | |||||||| Sbjct 14284 GATGGCTTCCCCCTGGTCACAACCAAGAAACTG-CACCTGAAATCCATCGTGCACGAACT 14226 Query 99322 GCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTAT 99381 |||||||||||| || ||||| || |||| ||| | || || || || || | || Sbjct 14225 GCTGTGGTTCCTCGCCGGGGATACGAACATCAAGTATCTCAAGGACAACGGCGTTTCGAT 14166 Query 99382 TTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGCG 99441 |||||||||||| | || || | ||||| || || ||||| ||||| || ||||| Sbjct 14165 CTGGGACGAATGGGCGGACGAAAACGGCGATCTGGGCCCGGTTTACGGGTCGCAATGGCG 14106 Query 99442 GTCTTGGCC 99450 | ||||| Sbjct 14105 CGCCTGGCC 14097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716457444354400