Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq2 176 7e-39 seq4 161 2e-34 seq562 129 9e-25 seq201 122 1e-22 seq19 91.5 2e-13 seq5 89.7 8e-13 seq3 87.8 3e-12 >seq2 Length=6328565 Score = 176 bits (194), Expect = 7e-39 Identities = 156/195 (80%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||| ||||||||||| |||||||| ||||| ||| ||| ||||| ||||| || || Sbjct 4241308 GACCGGACCGGCACCGGTACGCGCTCTTTGTTTGGGTACCAAATGCGCTTTGATCTCGCC 4241249 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 ||||| ||||| ||||| || || |||||| | ||||| || || ||||||||||||||| Sbjct 4241248 GAAGGGTTCCCGCTGGTCACGACCAAAAAGCTGCACCTGCGGTCGATCATTCACGAGCTG 4241189 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 || |||||||| || |||||||| ||| | || || || || ||||| |||| ||| Sbjct 4241188 CTCTGGTTCCTCGCCGGCGACACCAATATCGGGTATCTCAAGGAAAACGGCGTCAAGATC 4241129 Query 202729 TGGGACGAATGGGCG 202743 ||||| || |||||| Sbjct 4241128 TGGGATGACTGGGCG 4241114 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 3312198 TGTAGCTCAGTTGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 3312139 Query 2770 TCAGTCCTGCCA 2781 ||| || |||| Sbjct 3312138 TCACTCGCGCCA 3312127 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 3312326 TGTAGCTCAGTTGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 3312267 Query 2770 TCAGTCCTGCCA 2781 ||| || |||| Sbjct 3312266 TCACTCGCGCCA 3312255 >seq4 Length=3599618 Score = 161 bits (178), Expect = 2e-34 Identities = 162/207 (78%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 202548 AGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGAC 202607 |||||| || ||||| ||||| | |||| | ||||| |||| || | || ||| Sbjct 201492 AGACCGCACGGGCACTGGCACACTCTCCGTCTTCGGTCGCCAGGCCCGCTACGATCTGCG 201551 Query 202608 CGAAGGCTTCCCACTGG-TGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGC 202666 || || || || ||| | ||||| || ||| |||| ||||| || ||||| ||||||| Sbjct 201552 TGAGGGATTTCC-CTGCCTAACCACAAAGAAGCTTCATCTCCGCTCAATCATCCACGAGC 201610 Query 202667 TGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTA 202726 ||||||||||||| ||||| ||||||||||||| |||||||| || ||||| ||||| | Sbjct 201611 TGCTGTGGTTCCTCAAAGGTGACACCAACATCACCTACCTGAAGGAAAACGGCGTCACCA 201670 Query 202727 TCTGGGACGAATGGGCGCGGGATGAAA 202753 |||||||||||||||| |||||||| Sbjct 201671 TCTGGGACGAATGGGC---GGATGAAA 201694 >seq562 Length=35438 Score = 129 bits (142), Expect = 9e-25 Identities = 152/205 (74%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||| ||||| || ||||| || | ||||| || ||| | ||| || || Sbjct 12945 GACCGCACCGGTACGGGCACCTTGTCGTGTTTCGGCATGCAACAGCGCTATGATCTTGCC 13004 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 || |||||||| || || ||||||||||| | ||||| || || |||||||||||||| Sbjct 13005 GATGGCTTCCCGCTCGTCACCACGAAAAAACTGCACCTGCGCTCCATCATTCACGAGCTT 13064 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 |||||||| || || || |||||||||| |||||||| || || || || | ||| Sbjct 13065 CTGTGGTTTTTGTCCGGCGATACCAACATCAAATACCTGAAAGACAATGGTGTTTCGATC 13124 Query 202729 TGGGACGAATGGGCGCGGGATGAAA 202753 |||||||| ||||| |||||||| Sbjct 13125 TGGGACGAGTGGGC---GGATGAAA 13146 >seq201 Length=246981 Score = 122 bits (134), Expect = 1e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||| ||||||||||||||| |||| ||||| ||| ||| | | |||| | Sbjct 14344 GACCGCACCGGCACCGGCACGATTTCCTATTTCGGCATGCAGCAGCGCTATTCCCTGGCG 14285 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 || |||||||| ||||| || || || || | ||||| || ||| | ||||| ||| Sbjct 14284 GATGGCTTCCCCCTGGTCACAACCAAGAAACTGCACCTGAAATCCATCGTGCACGAACTG 14225 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 ||||||||||| ||||| || ||||||| || || || || ||||| || | ||| Sbjct 14224 CTGTGGTTCCTCGCCGGGGATACGAACATCAAGTATCTCAAGGACAACGGCGTTTCGATC 14165 Query 202729 TGGGACGAATGGGCG 202743 ||||||||||||||| Sbjct 14164 TGGGACGAATGGGCG 14150 >seq19 Length=1029424 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 202540 GAAAAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTT 202599 || ||| |||||||||||| |||||| || || ||||||| |||||| || || Sbjct 785620 GACAAGGGAGACCGTACCGGTGTCGGCACCCGGTCGGTGTTCGGCCGCCAGATCCGTTTC 785561 Query 202600 GACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATT 202659 ||||| |||||||| || ||||||||||| || ||||| ||||| || || ||| Sbjct 785560 AACCTGCAGGAAGGCTTTCCCCTGGTGACCACCAAGAAGGTCCACCTGCGCAGCATTATT 785501 Query 202660 CACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGG- 202718 | || |||| ||||| || || |||| ||| || | ||| | | | ||| Sbjct 785500 TATGAATTGCTCTGGTTTCTCCGGGGCTCCACCGACAACACCTGGCTGCAGG--AGCGGA 785443 Query 202719 -GGTCACTATCTGGGACGAATGGGCGCGGGA 202748 |||| | |||||| |||| ||||| | ||| Sbjct 785442 AGGTCTCCATCTGGAACGAGTGGGCACTGGA 785412 >seq5 Length=3486096 Score = 89.7 bits (98), Expect = 8e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 2622 TAGGGAAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGGTTGTTGGAGGTTCGAG 2681 |||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 711211 TAGGCCAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAAAGTTGGGGGTTCGAG 711270 Query 2682 TCCTCTCTTCCCTGCCA 2698 ||| || ||||||| Sbjct 711271 TCCCTCCTGGCCTGCCA 711287 >seq3 Length=4400433 Score = 87.8 bits (96), Expect = 3e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| ||||||||| ||| ||||||||| ||| |||||||||||||| |||| Sbjct 4302169 TGTAGCTCAGTTGGTTAGAGTACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCG 4302110 Query 2770 TCAGTCCTGCCATATCTGGAGAATTGGA 2797 ||| || ||||| ||| ||| |||| Sbjct 4302109 TCACTCGCGCCATTTCTCACGAAATGGA 4302082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788312786872000