Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031019.1 Length=41809 Score E Sequences producing significant alignments: (Bits) Value seq493 174 4e-39 >seq493 Length=52014 Score = 174 bits (192), Expect = 4e-39 Identities = 111/121 (92%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 34638 TTTTGCTGCTTCCAGCTCAACTCGCAGCTTCCCAACCGTAAGCGCAATATCCTCGTCCTC 34697 |||||||| ||| |||||||| ||||| ||||| || || |||||||||||||||| ||| Sbjct 48134 TTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTC 48193 Query 34698 CTGGTCGCGGAGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTGCCAGCAC 34757 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 48194 CTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 48253 Query 34758 A 34758 | Sbjct 48254 A 48254 Score = 174 bits (192), Expect = 4e-39 Identities = 111/121 (92%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 34638 TTTTGCTGCTTCCAGCTCAACTCGCAGCTTCCCAACCGTAAGCGCAATATCCTCGTCCTC 34697 |||||||| ||| |||||||| ||||| ||||| || || |||||||||||||||| ||| Sbjct 50914 TTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTC 50973 Query 34698 CTGGTCGCGGAGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTGCCAGCAC 34757 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 50974 CTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 51033 Query 34758 A 34758 | Sbjct 51034 A 51034 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 32752 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 32811 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47068 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 47127 Query 32812 TTAC 32815 |||| Sbjct 47128 TTAC 47131 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 32752 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 32811 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49848 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 49907 Query 32812 TTAC 32815 |||| Sbjct 49908 TTAC 49911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133666038097864