Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 4e-14 seq583 84.2 2e-11 seq3 84.2 2e-11 >seq5 Length=3486096 Score = 93.3 bits (102), Expect = 4e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 66399 AAAATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCT 66458 || ||||| | ||| ||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 1540321 AATATGGCGCGCCCACCAGGACTCGAACCTGGAACCTACGGCTTAGAAGGCCGTTGCTCT 1540262 Query 66459 ATCCAGCTGAGCTA 66472 |||||| ||||||| Sbjct 1540261 ATCCAGTTGAGCTA 1540248 >seq583 Length=31867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 66401 AATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 66460 |||||| ||||| |||||||||||||||||||||| | ||| | ||| | ||||||| Sbjct 12042 AATGGCGCACCCGACAGGATTCGAACCTGTGACCTCTGCCTTCGGAGGGCAGCGCTCTAT 11983 Query 66461 CCAGCTGAGCTAAGAGTGC 66479 |||||||||||| | |||| Sbjct 11982 CCAGCTGAGCTACGGGTGC 11964 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 66400 AAATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTA 66459 || |||| ||||| |||||||||||||||||||||| | ||| | ||| | |||||| Sbjct 26727 AATTGGCGCACCCGACAGGATTCGAACCTGTGACCTCTGCCTTCGGAGGGCAGCGCTCTA 26668 Query 66460 TCCAGCTGAGCTAAGAGTGC 66479 ||||||||||||| | |||| Sbjct 26667 TCCAGCTGAGCTACGGGTGC 26648 >seq3 Length=4400433 Score = 84.2 bits (92), Expect = 2e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 66401 AATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 66460 ||||| || ||| |||||||||||||||||||||||| | ||| ||| | ||||||||| Sbjct 3601231 AATGGTACGCCCAACAGGATTCGAACCTGTGACCTACTGATTAAAAGTCAGTTGCTCTA- 3601173 Query 66461 CCAGCTGAGCTAAGAGTGCAT 66481 ||| |||||||| | | |||| Sbjct 3601172 CCAACTGAGCTATGGGCGCAT 3601152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522110422645920