Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 158 2e-33 >seq1 Length=7344524 Score = 158 bits (174), Expect = 2e-33 Identities = 305/447 (68%), Gaps = 5/447 (1%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| ||||| ||||| || | ||| ||||| | || || || || ||||| || | Sbjct 2684068 AAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAGAGAAGCTC 2684009 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 ||||| ||||| | ||||| || || | ||| || || | ||| || ||||||||| Sbjct 2684008 AGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAACCAGAAAAG 2683949 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 || || || || || || ||||| ||| | || | ||| || | || | || | Sbjct 2683948 AAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAA---GGAACCATTCTCA 2683892 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || ||||| || || || |||||||| || || || || || || || Sbjct 2683891 ATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGATGGCGTTG 2683832 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || || ||| |||||| || | ||||||| || || || || | || || | Sbjct 2683831 AACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGGAGTAAGTC 2683772 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || ||||| ||||| || || |||||||| ||||| || || | || || || | Sbjct 2683771 TCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCTCCGTATAC 2683712 Query 48498 TGTACCTCCG-TACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 |||||||| | |||||| | || |||| ||||| ||||| || || ||| || || Sbjct 2683711 TGTACCTCGGCTACAAAGT-TCTCCGCCAGGTTCTCGTTTACGATCCCGTCAGAGGCCGC 2683653 Query 48557 AAAAAATGCTAATACATGTTTAATAAA 48583 |||||| || | ||||||||| || || Sbjct 2683652 AAAAAAGGCCAGTACATGTTTTATGAA 2683626 Score = 91.5 bits (100), Expect = 2e-13 Identities = 261/396 (66%), Gaps = 4/396 (1%) Strand=Plus/Minus Query 77155 TGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAG 77214 |||| ||||| ||||| ||||| || | | |||| ||||| |||| || |||| |||| Sbjct 2686364 TGTAGATATTGCTGGTGTATGGCTCGAAACATTCGTTGTTGCCCAGGATCTGAGAGGTAG 2686305 Query 77215 AAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTC-TGATTTTA 77273 ||||||||||||| || || |||| || || || | || |||| | ||| | || | Sbjct 2686304 AAGCAGTTGGCATTGGCGCTACCAGCAAGCTGTTGCGCAGGCCAT-TCTTCTTAATGTCC 2686246 Query 77274 TCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGT 77333 | || || | |||||||||| | || || ||| |||| | ||| || || Sbjct 2686245 TTCTTCAGCTCGGCCCAATCCCAACGTTCGCTTGGCGTCACACCCCACATATCATACTGC 2686186 Query 77334 AGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGC 77392 || | || | || || ||| || ||||| | || |||| |||| || ||| || Sbjct 2686185 AGTACACCCTCGCTGGCTGGTGAGCCCTTATAACTCTCGTAAGTACCTTGCTCTTT-GGC 2686127 Query 77393 TAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 77452 || |||| || | || || | || || || || || ||||| | || || | Sbjct 2686126 CAGGGCACAGCTTTCCGTCAGGGCCGCATAGTAGATGGTCTCAAAAATGTCTTTGTTCAA 2686067 Query 77453 ATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCC 77512 | |||| || |||||||| || || | | | ||| |||||||| || || || Sbjct 2686066 TTGGCGTGCCTCCTCGCTATCAAATGGGTAGCGCATCAAAATGAAGGCATCCGCCAAACC 2686007 Query 77513 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 77548 ||| || || | ||| || || | ||| | | |||| Sbjct 2686006 CTGTACACCCAAACCGATTGGGCGATGACGCATATT 2685971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694662443780480