Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 156 6e-33 >seq1 Length=7344524 Score = 156 bits (172), Expect = 6e-33 Identities = 397/600 (66%), Gaps = 8/600 (1%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 ||||| ||||| ||||| || | || ||||| | || || || || ||||| || | Sbjct 2684068 AAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAGAGAAGCTC 2684009 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 || || ||||| | |||||||| || | ||| || || | ||| || ||||||||| Sbjct 2684008 AGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAACCAGAAAAG 2683949 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA 46806 || || || || || || || || |||| || | ||| || | || | |||| | | Sbjct 2683948 AAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAA---GGAACCATTCTCA 2683892 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | ||||| || || ||||||||||| || || || || || || || Sbjct 2683891 ATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGATGGCGTTG 2683832 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || || ||| |||||| | | ||||||| ||| || || || | || || | Sbjct 2683831 AACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGGAGTAAGTC 2683772 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || || || || || || |||||||| ||||| || || | || || ||| | Sbjct 2683771 TCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCTCCGTATAC 2683712 Query 46987 TGTACCTCTG-TACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 |||||||| | |||||| | || | || ||||| || || || || ||| || || Sbjct 2683711 TGTACCTCGGCTACAAAGT-TCTCCGCCAGGTTCTCGTTTACGATCCCGTCAGAGGCCGC 2683653 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTT---TATTCCA 47102 |||||| |||| ||||||||| || || | |||||| | |||| ||||||| Sbjct 2683652 AAAAAAGGCCAGTACATGTTTTATGAAGTGACGCTCATCGTCGTTTAGTTTGCTATTCCA 2683593 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 || | | |||| | || | || || || |||||||| | || || | || Sbjct 2683592 ATCGGTCAGGTCTTGGCTCAGGTCAATCTCCTCCGCAGTCCAGAAACAGGCTTCCGACTT 2683533 Query 47163 TTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||||| ||| || ||| || ||||| || || | |||||||| ||| || || Sbjct 2683532 CTTATATTCGGCCCAGATGTCATCATGCTGGATGGGGAAGAGAACAAATCGATTCGGGTT 2683473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712927876650240