Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq5 159 5e-34 seq19 122 1e-22 seq562 100 4e-16 seq4 91.5 2e-13 >seq5 Length=3486096 Score = 159 bits (176), Expect = 5e-34 Identities = 195/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 99505 ATGAAGGCGTTGTTAAAGGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATC 99564 ||||||| || ||||| ||||| || ||||| || ||| | ||||||| ||| Sbjct 3432945 ATGAAGGTGTGCATAAAGAAGACCGAACCGGCACAGGGACGCTCAGCGTGTTTGGCTATC 3433004 Query 99565 AAATGCGTTTTAATTTGGCTGAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCC 99624 | ||||||||| || ||||| | || ||||| ||||||| ||||| || || |||| Sbjct 3433005 AGATGCGTTTTGATCTGGCTCAGGGGTTTCCATTGGTCACCACTAAAAAGTGCCATCTCC 3433064 Query 99625 GTTCTATTATTCATGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGA 99684 | |||||||||||||| || |||||||| || | || ||||||| | ||| ||| Sbjct 3433065 GCTCTATTATTCATGAGCTGCTTTGGTTTCTTCAGGGCAGCACCAATATCGCCTACTTGA 3433124 Query 99685 AAGATAACGGCGTCACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGG 99744 | ||||| ||||||| || ||| |||| |||| || || | ||||| | || |||| Sbjct 3433125 ACGATAATGGCGTCAAGATTTGGGATGATTGGGCAACTGAAGAAGGTGAGCTTGGCCCGG 3433184 Query 99745 TATACGGAAAGCAGTGGCGGTCTTGG 99770 |||| || |||||||||| || ||| Sbjct 3433185 TATATGGGGAGCAGTGGCGATCCTGG 3433210 >seq19 Length=1029424 Score = 122 bits (134), Expect = 1e-22 Identities = 227/327 (69%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 100167 CTGTCCTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATC 100226 || ||||| || |||||||| || ||||| ||| ||||| | || |||||||||||||| Sbjct 785155 CTTTCCTGCCAGCTCTACCAGCGCAGCGCCGACCTGTTCCTGGGCGTGCCGTTCAATATT 785096 Query 100227 GCGTCGTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGAC 100286 || || ||||||||||| |||||| |||| ||||| | || ||| || || || Sbjct 785095 GCCTCCTACGCTCTGCTCACGCACATGATTGCCCAACAGTGCGACCTGGAGGTTGGAGAG 785036 Query 100287 TTCGTCTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACA-GACA-CGTA 100344 ||||| || || ||| || ||||| ||||||||| | |||| ||| Sbjct 785035 TTCGTGCATACCTTCGGCGACTGTCACCTGTACCAGAACCATCTGACCGATGACATCGTC 784976 Query 100345 CTC-AGC--TAGGA-CGCACTCCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCT 100400 || ||| | | | |||| || ||| | || || | |||| ||||| || ||||| Sbjct 784975 TTCGAGCAGTTGAAGCGCAAGCCCCGCGCGTTGCCGACGCTGGTGATCAAACGCAAGCCC 784916 Query 100401 GACTCTATCTTCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCCTTACCCC 100460 || |||||||| || || | || ||||||||| |||||| || || || | || Sbjct 784915 GAGAGCATCTTCGAGTACGAGCTGGAGGACTTCGAGTTTGAGGGGTATGACCCGCATCCG 784856 Query 100461 GCCATTAAAGCGCCGGTGGCGATATGA 100487 | ||| || |||||| | || || ||| Sbjct 784855 GGCATCAAGGCGCCGATTGCCATCTGA 784829 >seq562 Length=35438 Score = 100 bits (110), Expect = 4e-16 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 99525 GACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCAT-CAAATGCGTTTTAATTTGGC 99583 ||||| || || || || || ||||| ||||| ||||| ||| ||| | | || | || Sbjct 12945 GACCGCACCGGTACGGGCACCTTGTCG-TGTTTCGGCATGCAACAGCGCTATGATCTTGC 13003 Query 99584 TGAAGGTTTTCCTCTGGTCACTACTAAGCG-CTGTCACCTCCGTTCTATTATTCATGAAC 99642 || || || || || ||||| || || ||| ||||| || || || ||||| || | Sbjct 13004 CGATGGCTTCCCGCTCGTCACCACGAAAAAACTG-CACCTGCGCTCCATCATTCACGAGC 13062 Query 99643 TCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTA 99702 | || ||||| || || |||||||| | | | ||||||||||| || || || | | Sbjct 13063 TTCTGTGGTTTTTGTCCGGCGATACCAACATCAAATACCTGAAAGACAATGGTGTTTCGA 13122 Query 99703 TCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGC 99762 ||||| | ||||||| | || || || ||| | || ||||| || || | ||||||| Sbjct 13123 TCTGGGACGAGTGGGCGGATGAAAATGGCGACCTTGGGCCGGTCTATGGTTACCAGTGGC 13182 Query 99763 G 99763 | Sbjct 13183 G 13183 >seq4 Length=3599618 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 99617 TCACCTCCGTTCTATTATTCATGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCA 99676 ||| ||||| || || || || || || || |||||||| ||||| || ||||| | | Sbjct 201585 TCATCTCCGCTCAATCATCCACGAGCTGCTGTGGTTCCTCAAAGGTGACACCAACATCAC 201644 Query 99677 GTACCTGAAAGATAACGGCGTCACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTT 99736 |||||||| || ||||||||||| |||||| | || |||| | || ||||| ||| | Sbjct 201645 CTACCTGAAGGAAAACGGCGTCACCATCTGGGACGAATGGGCGGATGAAAACGGGGACCT 201704 Query 99737 AGGACCGGTATACGG 99751 || || || ||||| Sbjct 201705 CGGCCCCGTCTACGG 201719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734268481381920