Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq201 199 2e-46 seq19 145 5e-30 seq4 131 1e-25 seq198 122 5e-23 >seq201 Length=246981 Score = 199 bits (220), Expect = 2e-46 Identities = 501/752 (67%), Gaps = 22/752 (3%) Strand=Plus/Minus Query 836 GATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACC 895 || |||||||||||||||||| | | | |||||| |||| ||| || ||| | Sbjct 14344 GACCGCACCGGCACCGGCACGATTTCCTATTTCGGCATGCAGCAGCGCTATTCCCTGGCG 14285 Query 896 GAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTT 955 || |||||||| |||||||| || ||| | ||| | ||||| | | | ||||||| Sbjct 14284 GATGGCTTCCCCCTGGTCACAACCAAGAAACTGCACCTGAAATCCATCGTGCACGAACTG 14225 Query 956 CTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATC 1015 |||||||||||| || || |||||| | ||| ||||| ||||||||||| | ||| Sbjct 14224 CTGTGGTTCCTCGCCGGGGATACGAACATCAAGTATCTCAAGGACAACGGCGTTTCGATC 14165 Query 1016 TGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGG 1075 |||||||| ||||| |||| ||| | || || || || ||||| |||| ||||| Sbjct 14164 TGGGACGAATGGGCGGACGAAAACGGCGATCTGGGCCCGGTTTACGGGTCGCAATGGCGC 14105 Query 1076 CACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCGTGGAG 1135 ||||| ||| | || | | | ||| ||||||||| | || || Sbjct 14104 GCCTGGC----CGACGCCGCATG-----GGCAGATCGACCAGATCGAGAAACTGGTTCAG 14054 Query 1136 CTGCTTCGCGAGGACCCTGACTCGCGCCG---GAACGTGGTATCCGCATGGAACGTCGGT 1192 || | ||| | ||| ||||||||||| || |||| || || |||||| | Sbjct 14053 ATGATCCGCAAATCCCCCGACTCGCGCCGCCTGATCGTG---TCGGCCTGGAACCCGGCC 13997 Query 1193 GACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGAC 1252 || || ||| ||||| || | ||| || |||| | ||| ||| || || | | Sbjct 13996 GAGGTCGACGAGATGGCGCTGCCCCCCTGTCACACCCTGTGGCAGGTGCGGATCTCGGGC 13937 Query 1253 GGCCGGCTCTCGCTGCAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTC 1312 || ||| |||||| | |||||||| || ||||||||||| || ||||| ||| Sbjct 13936 GGGAAGCTGCACCTGCAGCTGTACCAGCGTTCGGCCGACATGTTCCTGGGCGTGCCCTTC 13877 Query 1313 AATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCG-GGT 1371 || |||||||| |||||||| || | |||| | || || |||| | || | Sbjct 13876 AACATCGCCTCTTACGCGCTGCTTCTGGTCATGCTGGCCCATGTCACCGG-GTACGAGCC 13818 Query 1372 GGGTGAGCTGATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGGC 1431 || || | | || ||||||| ||||||||| |||||| | || |||| Sbjct 13817 CGGCGATTTCGTGCATTCCATCGGCGACGCCCACATCTATTCCAACCATATGGAGCAGGT 13758 Query 1432 GCTGATGCAGCTCCGCCG-ACGACCGCGGCCCTACCCGAG--GCTCGTGCTACACCACG- 1487 | ||||||| ||| ||| || || || ||| || || | || | | ||| Sbjct 13757 GAAACTGCAGCTGTCCCGCACGCCCCACGCGCTGCCCCAGCTGCGCCTGACCCGCGACGT 13698 Query 1488 CGCCGTCGATCTTCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACCCGCACC 1547 || | ||||||||||| | ||||| |||| | || | || |||||||| ||| || Sbjct 13697 CGGC-TCGATCTTCGATTTCCGGTTCGAGGATTTCGAATTCCTGAACTACACCCCCGACG 13639 Query 1548 CGTCGATCAAGGCGCCGGTGGCCGTCTGATGG 1579 || | |||||||| || || || |||||| || Sbjct 13638 CGGCCATCAAGGCCCCCGTCGCGGTCTGAGGG 13607 >seq19 Length=1029424 Score = 145 bits (160), Expect = 5e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 1204 CATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTC 1263 |||||| || || |||||| | |||||||| | ||||| | |||||| |||| || Sbjct 785210 CATGGCTCTGGCGCCTTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAGGCTTTC 785151 Query 1264 GCTGC-AGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCT 1322 |||| || |||||||||||||||| ||| ||||||| || |||||||||||||| |||| Sbjct 785150 -CTGCCAGCTCTACCAGCGCAGCGCCGACCTGTTCCTGGGCGTGCCGTTCAATATTGCCT 785092 Query 1323 CGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGCTGA 1382 | ||||| || ||| |||||||| | || || ||| || |||| ||| || ||| | Sbjct 785091 CCTACGCTCTGCTCACGCACATGATTGCCCAACAGTGCGACCTGGAGGTTGGAGAGTTCG 785032 Query 1383 TCTGGACCGGCGGCGACTGCCACATCTACAACAACCA 1419 | ||| ||||||||| ||| | ||| | ||||| Sbjct 785031 TGCATACCTTCGGCGACTGTCACCTGTACCAGAACCA 784995 >seq4 Length=3599618 Score = 131 bits (144), Expect = 1e-25 Identities = 289/426 (68%), Gaps = 28/426 (7%) Strand=Plus/Plus Query 948 ACGAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCG 1007 |||| || ||||||||||||| || ||||| ||| | | || || || ||||||| Sbjct 201605 ACGAGCTGCTGTGGTTCCTCAAAGGTGACACCAACATCACCTACCTGAAGGAAAACGGCG 201664 Query 1008 TCACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCG- 1066 |||||||||||||||| ||||| || | ||| ||||||| || |||||||| ||| Sbjct 201665 TCACCATCTGGGACGAATGGGCGGATGAAAACGGGGACCTCGGCCCCGTCTACGG-GCGT 201723 Query 1067 CAGTGGCGGCACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCC 1126 || ||| || | ||| | |||||||| || ||| || ||||| ||| || Sbjct 201724 CAATGGAGGAAATGGAAAACCGAGGACG--GGCGGGTC----ATCGACCAAATCGGGGAA 201777 Query 1127 GCCGTGGAGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAAC 1186 | || || | | |||| | || ||||| || | || |||||||||||| Sbjct 201778 CTTATCGAAAGCCTCACCTACAACCCCCAATCCCGCCGCCACATCGTCTCCGCATGGAAC 201837 Query 1187 GTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTC 1246 || | ||| | || ||||| || | ||| ||||| || | |||||| | |||||| Sbjct 201838 GTGGCCGACGTGCCGGAAATGGCCCTCCCCCCTTGCCATCTCCTTTTCCAGTTCTACGTC 201897 Query 1247 -------GTC--GACGG-------CC--GGCTCTCGCTG-CAGGTCTACCAGCGCAGCGC 1287 || |||| || | ||||| ||| ||| |||||||||||||||| Sbjct 201898 CATGAAGCTCAAAACGGGGGCAAACCAGGACTCTC-CTGCCAGCTCTACCAGCGCAGCGC 201956 Query 1288 GGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTT 1347 || | || || || || || ||||| |||||||| ||||| |||||| | || || | Sbjct 201957 CGATCTTTTTCTAGGCGTTCCCTTCAACATCGCCTCCTACGCTCTCCTCACCCATCTGGT 202016 Query 1348 CGCGCA 1353 ||| || Sbjct 202017 CGCTCA 202022 >seq198 Length=250510 Score = 122 bits (134), Expect = 5e-23 Identities = 131/169 (78%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 1175 TCCGCATGGAAC--GTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGT 1232 || || |||||| ||||| ||||| || | ||||| || | |||||||||||| | | Sbjct 64127 TCTGCCTGGAACCCGTCGG--ACCTCGGCAAGATGGCCCTCCCCCCGTGCCACATGTTCT 64070 Query 1233 TCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCGGAC 1291 |||| | ||||| | || || ||| || |||| || | |||||||||||||||||| Sbjct 64069 GCCAGTTTTACGTGGCGGAGGGGGAGCTGTC-CTGCCAGATGTACCAGCGCAGCGCGGAC 64011 Query 1292 ATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGC 1340 ||| ||||| ||||| |||||||||||||| |||||||| ||| ||| Sbjct 64010 ATGGGTCTCGGGGTGCCTTTCAATATCGCCTCCTACGCGCTGCTCACGC 63962 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 795 ACCTGTTGCGCGACATCCTGGAGACTGGCAAGTCGAAGGATGATCGCACCGGCACCGGCA 854 ||||| ||| ||||||||||| | ||| | | || || |||||||| || || | Sbjct 65421 ACCTGGTGCAGGACATCCTGGAAAACGGCGTGCGCAGGGGGGACCGCACCGGGACGGGGA 65362 Query 855 CGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGG---GCTTCCCGCTGG 911 | ||| ||||||||||| ||| |||| | | ||| | |||| |||||||||| Sbjct 65361 CCCTGTCCAAGTTCGGCGTGCAGATGCGCTTCAGCCTGAGGGAGGAGCTCTTCCCGCTGC 65302 Query 912 TCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGTGGTTCCTCAGTG 971 ||||||| |||||||| || || ||| | || || |||||||| | | Sbjct 65301 TCACCACCAAGCGCGTGTTCTGGCGCGGCGTCGCGGAGGAGCTGCTGTGGTTTGTTTCCG 65242 Query 972 GCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATCTGGGACG 1022 || ||| |||| || | |||||| |||| || || ||||||||||| Sbjct 65241 GCTGCACCAACGCAAACGTGCTCAAGGACAGGGGGATCCACATCTGGGACG 65191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296128558139532