Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq6 159 1e-34 seq273 136 1e-27 seq244 122 3e-23 seq4 107 6e-19 >seq6 Length=3173221 Score = 159 bits (176), Expect = 1e-34 Identities = 233/324 (72%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 40083 CCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATC 40142 |||||||| |||||| | ||| || ||||||||||| || | |||| |||| Sbjct 3148557 CCGAAGGTAATGATCTGCGACACCGCCTCACGCCCGTACTTCTGGGCGGTGTACTCGATC 3148616 Query 40143 ACGTCGCCCCGTCGCCGGTCATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40200 || | |||| ||| ||| |||||||| ||||| ||||||||| || || || | Sbjct 3148617 ACCCTGTCCCG--GCCTTCCATGCAGAAGTCGACGTCAAAGTCGGGCATTGAGACCCGTT 3148674 Query 40201 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGAT-- 40258 | ||||||||||| |||||||| | | ||| | || |||||||| ||||| Sbjct 3148675 CCGGGTTCAGGAAGCGCTCGAACAGCAAATCGTATTCCAGCGGATCCAGGTCGGTGATCA 3148734 Query 40259 GCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACAC 40318 || | ||| ||||| ||||| || |||||| | || || || || || || ||| ||| Sbjct 3148735 GCTG-CGCA-TAGGCTACCAGAGAGCCGGCACCGGAACCCCGGCCCGGCCCCACCGGCAC 3148792 Query 40319 GCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCC 40378 ||||| | ||||||||| ||| ||||| |||| |||||||||| |||||| || Sbjct 3148793 ACCGTTGTTCTTGGCCCACTTGATAAAGTCCATCACGATCAGGAAGTAGCCCGGGAAACC 3148852 Query 40379 CAGCTGGATGATCATGTCGATCTC 40402 || ||||||||| ||||| | ||| Sbjct 3148853 CATCTGGATGATGATGTCCAGCTC 3148876 Score = 87.8 bits (96), Expect = 6e-13 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 39200 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTG 39259 || |||||||| |||||||||| ||||| ||||| || |||||||| | || || Sbjct 3147689 CTGCTTGGCCATCTCCTCGGGCTTTTTCTTACCCATAGCGCGGCGGAGCATATCCGCACC 3147748 Query 39260 ACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGAC 39319 ||||||| |||| || || | | ||| || || | |||||||||||||| | || Sbjct 3147749 ACCCAGGGTGTAGCCGGCCATTACCTGGGCGATCTGCATGACCTGCTCCTGGTACAGGAT 3147808 Query 39320 CAGCCCGTAGGTCGGCCCCAG 39340 | ||||||||| ||| |||| Sbjct 3147809 GACCCCGTAGGTTGGCTCCAG 3147829 >seq273 Length=166498 Score = 136 bits (150), Expect = 1e-27 Identities = 212/297 (71%), Gaps = 7/297 (2%) Strand=Plus/Plus Query 40082 ACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGAT 40141 ||||||||| |||||| | |||||||| ||||| ||||| ||||| | ||| Sbjct 154763 ACCGAAGGTGATGATCTGCCCCACCTTGTCGCGGCCGTATTTCTCTTGAACGTAGCGGAT 154822 Query 40142 CACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40199 ||| || |||| || || || |||||||||||| | ||||||||| || || || Sbjct 154823 CACCTCTTCCCGGCGATCCATGCA--GAAGTCGATGTCGAAGTCGGGCATCGAAACCCGT 154880 Query 40200 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGAT- 40258 ||||||||||||||||| ||||| | ||| | | | || || ||||| ||||| Sbjct 154881 TCGGGGTTCAGGAACCGTTCGAACAGAAGCGAATAGCGCAGCGGATCAAGGTCGGTGATC 154940 Query 40259 GCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACAC 40318 | | ||| || ||||| || || || ||| | || || || || || |||||| | Sbjct 154941 GTCAGCGCA-TAAGCGACGAGTGAGCCCGCACCAGACCCCCGCCCCGGACCGACCGGAAT 154999 Query 40319 GCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAA 40375 | ||| ||||||||||| ||| || || || |||| ||||||||| | |||||| Sbjct 155000 GTCGTGATCCTTGGCCCATTGGATAAAATCCGCAACGATCAGGAAGTA-GCCGGGAA 155055 >seq244 Length=185980 Score = 122 bits (134), Expect = 3e-23 Identities = 213/303 (70%), Gaps = 8/303 (3%) Strand=Plus/Plus Query 40082 ACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTG-ACGTACCTGA 40140 ||| ||||| |||||| | ||||| || |||||||||| | || ||||| ||| Sbjct 106450 ACCAAAGGTGATGATCTGCCCCACCTTATCGCGGCCGTACTTCT-GCTGCACGTATTTGA 106508 Query 40141 TCACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCG 40198 |||| || | || || || || |||||||||||| | |||||||||||| || || Sbjct 106509 TCACTTCCTCGCGGCGATCCATGCA--GAAGTCGATGTCGAAGTCGGGCATGGAAACCCG 106566 Query 40199 CTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGAT 40258 || ||||||| ||| || || || | || | || | | || || ||||| || || Sbjct 106567 TTCCGGGTTCAAGAAGCGTTCAAACAGCAGGCTGTAGCGCAGCGGATCAAGGTCGGTAAT 106626 Query 40259 GCCGAG-GCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACA 40317 | || ||| || || ||||||||||| ||| | ||||| || || || || ||| | Sbjct 106627 GGTCAGCGCA-TACGCCACCAGCGAACCCGCACCAGAGCCCCGCCCCGGCCCCACCGGGA 106685 Query 40318 CGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACC 40377 || | |||||| |||| ||| ||||| || |||| |||||| ||| ||||| | Sbjct 106686 TACCCTGTTCCTTGCCCCATTTGATAAAGTCTGCAACGATCAGGAAATAGCCAGGGAATC 106745 Query 40378 CCA 40380 ||| Sbjct 106746 CCA 106748 >seq4 Length=3599618 Score = 107 bits (118), Expect = 6e-19 Identities = 206/298 (69%), Gaps = 12/298 (4%) Strand=Plus/Plus Query 40114 CCCCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCGC--CGGTCATCGAAGTC 40171 ||||||| ||||| ||| ||| ||| || ||| |||| || | | || ||| || Sbjct 1856461 CCCCGTATTTCTCACGGACATACTGGATGACCTCGGCCCGGCGGGACTGGCA--GAAATC 1856518 Query 40172 GATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCC 40231 ||| || |||||||| ||| || |||||||| || ||||| |||||||||| ||| || Sbjct 1856519 GATATCGACGTCGGGAGGGGATACACGCTCGGGATTGAGGAATCGCTCGAAGAGGAGGCC 1856578 Query 40232 GTGCGGGATGGGGTCCAGGTCT--GTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCA 40289 | | | | ||| ||| | | ||||| || | | ||||| | | || ||||| || Sbjct 1856579 GAACTGCAAGGGA--CAGATATTGGTGATTCCCATGGCGTAGGAGGCGAGAGAACCCGCG 1856636 Query 40290 GCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCG 40349 || ||||| || ||||| ||||| | ||| ||| ||||| ||| ||||| Sbjct 1856637 GCGGAGCCCCGGCCGGGACCGACGGGGATATCGTGGTCCCGCGCCCACTGGATAAAGTCC 1856696 Query 40350 GCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGA--TGATCATGTCGATCTCGTA 40405 ||| || ||||||||||| | ||| || || ||| |||| |||| | ||||| Sbjct 1856697 GCGGTGATAAGGAAGTAGGATGCGAAGCCGAG--GGAATTGATGGTGTCCACTTCGTA 1856752 Score = 91.5 bits (100), Expect = 5e-14 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 39224 CTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGAGGAT 39283 |||||| ||||| || ||||| ||||||||||| ||| || |||| || ||||||| Sbjct 1855628 CTTCTTACCCATCGCGCGGCGTAGAAGGTCGGCACCACCGAGCGTGTATCCGGCGAGGAC 1855687 Query 39284 CTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGACCAGCCCGTAGGT 39331 || ||| || ||||||||||| ||||| ||||| | | |||||||| Sbjct 1855688 CTTTGCGGCGTTCTGCACCTGTTCCTGATAGATCATGACGCCGTAGGT 1855735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160139407976096