Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq4 197 2e-45 seq2 158 2e-33 seq562 141 1e-28 seq201 134 2e-26 seq19 132 8e-26 seq3 107 3e-18 seq5 100 4e-16 seq457 87.8 3e-12 >seq4 Length=3599618 Score = 197 bits (218), Expect = 2e-45 Identities = 217/286 (76%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 201790 CATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGA 201849 ||||||| |||| ||| | || ||||||| |||||||||||| | | || Sbjct 201435 CATGAAAGCCTATCACGACCTCCTTACCGATGTTCTCGAAAACGGGGAGGAGCGCGGAGA 201494 Query 201850 CCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGA 201909 ||| || || || ||||| ||||| || ||||| |||||| |||| | | | || Sbjct 201495 CCGCACGGGCACTGGCACACTCTCCGTCTTCGGTCGCCAGGCCCGCTACGATCTGCGTGA 201554 Query 201910 AGGTTTTCCGCTGG-TCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGC 201968 || ||||| ||| | ||||| || ||| |||| || || ||||||||||| ||||||| Sbjct 201555 GGGATTTCC-CTGCCTAACCACAAAGAAGCTTCATCTCCGCTCAATCATCCACGAGCTGC 201613 Query 201969 TGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCT 202028 |||||||||||| ||||||||||||||| || |||| || ||| ||||||||||| Sbjct 201614 TGTGGTTCCTCAAAGGTGACACCAACATCACCTACCTGAAGGAAAACGGCGTCACCATCT 201673 Query 202029 GGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGG 202074 ||||||||||||||||| ||||||| ||| | ||||| || ||||| Sbjct 201674 GGGACGAATGGGCGGATGAAAACGGGGACCTCGGCCCCGTCTACGG 201719 >seq2 Length=6328565 Score = 158 bits (174), Expect = 2e-33 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||| ||||| || || || | |||| | || || ||| ||||||||| | | Sbjct 4241309 CGACCGGACCGGCACCGGTACGCGCTCTTTGTTTGGGTACCAAATGCGCTTTGATCTCGC 4241250 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 ||||| || ||||||||||| ||||||||| | ||||| || || ||||| || ||||| Sbjct 4241249 CGAAGGGTTCCCGCTGGTCACGACCAAAAAGCTGCACCTGCGGTCGATCATTCACGAGCT 4241190 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 ||| ||||||||| || |||||||| ||| |||| | || || ||| ||||| || Sbjct 4241189 GCTCTGGTTCCTCGCCGGCGACACCAATATCGGGTATCTCAAGGAAAACGGCGTCAAGAT 4241130 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 |||||| || ||||||||| | || || || | || ||||| ||||| | || ||||| Sbjct 4241129 CTGGGATGACTGGGCGGATGAGAAGGGCGAGCTTGGTCCGGTCTACGGATACCAGTGGCG 4241070 >seq562 Length=35438 Score = 141 bits (156), Expect = 1e-28 Identities = 179/241 (74%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 201848 GACCGTACCGGTACGGGCACCCTCTCTGTTTTCGG-ACGCCAGATGCGCTTTAA-CTTAC 201905 ||||| ||||||||||||||| | || |||||| | || | | ||||| | | ||| | Sbjct 12945 GACCGCACCGGTACGGGCACCTTGTCGTGTTTCGGCATGCAACA-GCGCTATGATCTTGC 13003 Query 201906 AAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGC 201965 || || || ||||| |||||||| ||||| | ||||| || || ||||| || |||| Sbjct 13004 C-GATGGCTTCCCGCTCGTCACCACGAAAAAACTGCACCTGCGCTCCATCATTCACGAGC 13062 Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025 | |||||||| | || || ||||||||| | || |||||||||| || | | Sbjct 13063 TTCTGTGGTTTTTGTCCGGCGATACCAACATCAAATACCTGAAAGACAATGGTGTTTCGA 13122 Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGC 202085 |||||||||| ||||||||| |||| || ||| | || ||||| || ||| | || |||| Sbjct 13123 TCTGGGACGAGTGGGCGGATGAAAATGGCGACCTTGGGCCGGTCTATGGTTACCAGTGGC 13182 Query 202086 G 202086 | Sbjct 13183 G 13183 >seq201 Length=246981 Score = 134 bits (148), Expect = 2e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 201848 GACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAA 201907 ||||| ||||| || ||||| | || |||||| ||| ||||| | | | Sbjct 14344 GACCGCACCGGCACCGGCACGATTTCCTATTTCGGCATGCAGCAGCGCTATTCCCTGGCG 14285 Query 201908 GAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTG 201967 || || || || |||||||| ||||| || | ||||| || ||| | || || ||| Sbjct 14284 GATGGCTTCCCCCTGGTCACAACCAAGAAACTGCACCTGAAATCCATCGTGCACGAACTG 14225 Query 201968 CTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATC 202027 |||||||||||| || || || |||||| ||||| | || |||||| ||| | ||| Sbjct 14224 CTGTGGTTCCTCGCCGGGGATACGAACATCAAGTATCTCAAGGACAACGGCGTTTCGATC 14165 Query 202028 TGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 ||||||||||||||||| ||||||| || | |||||||| ||||| ||||||||| Sbjct 14164 TGGGACGAATGGGCGGACGAAAACGGCGATCTGGGCCCGGTTTACGGGTCGCAATGGCG 14106 >seq19 Length=1029424 Score = 132 bits (146), Expect = 8e-26 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 201848 GACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAA 201907 |||||||||||| ||||||| || || ||||| |||||||| || || ||| | || Sbjct 785611 GACCGTACCGGTGTCGGCACCCGGTCGGTGTTCGGCCGCCAGATCCGTTTCAACCTGCAG 785552 Query 201908 GAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTG 201967 ||||| ||||| ||||| |||||||| ||||| ||||| || || || |||| || Sbjct 785551 GAAGGCTTTCCCCTGGTGACCACCAAGAAGGTCCACCTGCGCAGCATTATTTATGAATTG 785492 Query 201968 CTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATC 202027 || ||||| ||| ||| |||| ||| | | || | || || ||| ||||| Sbjct 785491 CTCTGGTTTCTCCGGGGCTCCACCGACAACACCTGGCTGCAGGAGCGGAAGGTCTCCATC 785432 Query 202028 TGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGT 202087 ||| |||| ||||| | || |||||| | || || | ||||| ||||| |||||| Sbjct 785431 TGGAACGAGTGGGCACTGGAGAATGGTGACCTCGGGCCCATTTACGGCAAGCAGTGGCGT 785372 Query 202088 AGCTGG 202093 |||||| Sbjct 785371 AGCTGG 785366 >seq3 Length=4400433 Score = 107 bits (118), Expect = 3e-18 Identities = 206/304 (68%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 201790 CATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGA 201849 |||||| |||||||| ||||| | || ||| ||||||||| | | | | ||| Sbjct 1995025 CATGAAGCAATATCTCGACTTGTTAGAAGACATTCTCGAAAACGGCGTAGAACGCGGCGA 1995084 Query 201850 CCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGA 201909 ||| ||||| || ||||| ||| || || ||||| || ||||| || || | || Sbjct 1995085 CCGCACCGGGACAGGCACGCTCGGCGTGTTTGGACGACAAATGCGGTTCGACCTGAGTGA 1995144 Query 201910 AGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCT 201969 | ||||| || | ||||| || || | || | || || ||||| || || | Sbjct 1995145 GCGATTTCCACTCCTGACCACTAAGAAATTGCATTTGCGGTCGATCATTGTCGAACTCTT 1995204 Query 201970 GTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTG 202029 |||||||| || || || || | | | ||| | ||| ||| || | || || Sbjct 1995205 ATGGTTCCTACGCGGCGATACAAATGTGCGCTGGTTGCAGGACCGCAAAGTTAAGATTTG 1995264 Query 202030 GGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAG 202089 |||||| ||||| || | || ||||| | || ||||| ||||| |||||||||||||| Sbjct 1995265 GGACGAGTGGGCTGACGAGAATGGTGATCTCGGGCCGGTTTACGGCAAGCAATGGCGTAG 1995324 Query 202090 CTGG 202093 |||| Sbjct 1995325 CTGG 1995328 >seq5 Length=3486096 Score = 100 bits (110), Expect = 4e-16 Identities = 174/253 (69%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 201842 AAAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAAC 201901 |||| ||||| ||||| || || || ||| || || || |||||||| ||| | Sbjct 3432959 AAAGAAGACCGAACCGGCACAGGGACGCTCAGCGTGTTTGGCTATCAGATGCGTTTTGAT 3433018 Query 201902 TTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCAT 201961 | | || ||||| |||||||||| |||||| || || || || || || ||| Sbjct 3433019 CTGGCTCAGGGGTTTCCATTGGTCACCACTAAAAAGTGCCATCTCCGCTCTATTATTCAT 3433078 Query 201962 GAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTC 202021 |||||||| ||||| || ||| |||||| ||| || ||||| || || |||| Sbjct 3433079 GAGCTGCTTTGGTTTCTTCAGGGCAGCACCAATATCGCCTACTTGAACGATAATGGCGTC 3433138 Query 202022 ACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAA 202081 | || ||||| || ||||| | || | ||||| | |||||||| || || |||| Sbjct 3433139 AAGATTTGGGATGATTGGGCAACTGAAGAAGGTGAGCTTGGCCCGGTATATGGGGAGCAG 3433198 Query 202082 TGGCGTAGCTGGA 202094 ||||| ||||| Sbjct 3433199 TGGCGATCCTGGA 3433211 Score = 89.7 bits (98), Expect = 8e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 618 AGTAGTTCAACTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGCAGGTTCGAGTCCTGT 677 |||||||||| |||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 711217 AGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAAAGTTGGGGGTTCGAGTCCCTC 711276 Query 678 CTCCCCTGCCA-AATT 692 || ||||||| |||| Sbjct 711277 CTGGCCTGCCAGAATT 711292 >seq457 Length=62169 Score = 87.8 bits (96), Expect = 3e-12 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 4015 ACCATTTTAAATTGTCTCGTAGCTCAGTT-GGTTAGAGCGCTCGCCTGATAAGCGGGAGG 4073 ||||| || | | | | |||||||||| ||||||||||| ||||||||||||| |||| Sbjct 42531 ACCATGTTTATTGGGCCCGTAGCTCAGCCCGGTTAGAGCGCACGCCTGATAAGCGTGAGG 42590 Query 4074 TCGGTAGTTCAAGTCTACTCGAGACAACCA 4103 |||||||||| ||||||| || | | |||| Sbjct 42591 TCGGTAGTTCGAGTCTACCCGGGCCCACCA 42620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787995989770720