Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq4 118 2e-21 seq2 107 3e-18 seq5 100 4e-16 seq19 91.5 2e-13 seq201 89.7 8e-13 >seq4 Length=3599618 Score = 118 bits (130), Expect = 2e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 200143 CGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCC 200202 |||| | |||| | || || || || | | || || |||||| |||||||| || Sbjct 201538 CGCTACGATCTGCGTGAGGGATTTCCCTGCCTAACCACAAAGAAGCTTCATCTCCGCTCA 201597 Query 200203 ATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGAT 200262 ||||| ||||||||| |||||||||| || ||||||||||| |||| || ||||| || Sbjct 201598 ATCATCCACGAGCTGCTGTGGTTCCTCAAAGGTGACACCAACATCACCTACCTGAAGGAA 201657 Query 200263 AACAATGTCACCATTTGGGACGAATGGGCG 200292 ||| |||||||| ||||||||||||||| Sbjct 201658 AACGGCGTCACCATCTGGGACGAATGGGCG 201687 >seq2 Length=6328565 Score = 107 bits (118), Expect = 3e-18 Identities = 124/166 (75%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 200127 TTTCGGTGCACAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAA 200186 ||| ||| | || |||||||| |||| || || ||||| |||| |||||||| || Sbjct 4241278 TTTGGGTAC-CAAATGCGCTTTGATCTCGCCGAAGGGTTCCCGCTGGTCACGACCAAAAA 4241220 Query 200187 GTGCCATCTCCGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATAT 200246 | || || || || ||||||||||||||| | |||||||| ||| ||||||||||| Sbjct 4241219 GCTGCACCTGCGGTCGATCATTCACGAGCTGCTCTGGTTCCTCGCCGGCGACACCAATAT 4241160 Query 200247 CAAGTATCTGAACGATAACAATGTCACCATTTGGGACGAATGGGCG 200292 | |||||| || || ||| |||| || ||||| || |||||| Sbjct 4241159 CGGGTATCTCAAGGAAAACGGCGTCAAGATCTGGGATGACTGGGCG 4241114 >seq5 Length=3486096 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTC 200196 |||||||| || |||| | || || |||||||| || || || |||||||||||| Sbjct 3433004 CAGATGCGTTTTGATCTGGCTCAGGGGTTTCCATTGGTCACCACTAAAAAGTGCCATCTC 3433063 Query 200197 CGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTG 200256 || || || ||||| |||||| | ||||| ||| | || |||||||||| || || Sbjct 3433064 CGCTCTATTATTCATGAGCTGCTTTGGTTTCTTCAGGGCAGCACCAATATCGCCTACTTG 3433123 Query 200257 AACGATAACAATGTCACCATTTGGGACGAATGGGC 200291 |||||||| |||| |||||||| || ||||| Sbjct 3433124 AACGATAATGGCGTCAAGATTTGGGATGATTGGGC 3433158 >seq19 Length=1029424 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 200838 GCTTTCCTGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCAACAT 200897 ||||||||| ||||| || ||||| ||||| || |||| | |||||||||||||| || Sbjct 785156 GCTTTCCTGCCAGCTCTACCAGCGCAGCGCCGACCTGTTCCTGGGCGTGCCGTTCAATAT 785097 Query 200898 TGCATCATACGCACTACTGATTCACATGGTAGCCCAACAG 200937 ||| || ||||| || || | |||||| | ||||||||| Sbjct 785096 TGCCTCCTACGCTCTGCTCACGCACATGATTGCCCAACAG 785057 >seq201 Length=246981 Score = 89.7 bits (98), Expect = 8e-13 Identities = 107/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 200158 GACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCACGAGCTG 200217 || |||||||| |||| || |||||||| || || |||||| | ||||| ||| Sbjct 14284 GATGGCTTCCCCCTGGTCACAACCAAGAAACTGCACCTGAAATCCATCGTGCACGAACTG 14225 Query 200218 TTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTCACCATT 200277 |||||||||| ||| || || || ||||||||||| || || ||| || | || Sbjct 14224 CTGTGGTTCCTCGCCGGGGATACGAACATCAAGTATCTCAAGGACAACGGCGTTTCGATC 14165 Query 200278 TGGGACGAATGGGCGCGAGACGAAA 200302 ||||||||||||||| ||||||| Sbjct 14164 TGGGACGAATGGGCG---GACGAAA 14143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783352832256000