Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq2 210 3e-49 seq562 170 3e-37 seq5 159 5e-34 seq4 138 2e-27 seq19 91.5 2e-13 seq60 86.0 1e-11 >seq2 Length=6328565 Score = 210 bits (232), Expect = 3e-49 Identities = 190/239 (79%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| |||||||| || || |||| | || ||||| || ||||| ||||| || | Sbjct 4241308 GACCGGACCGGCACCGGTACGCGCTCTTTGTTTGGGTACCAAATGCGCTTTGATCTCGCC 4241249 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 ||||||||||||||||||| ||||||||| |||||||||| || ||||| ||||| ||| Sbjct 4241248 GAAGGGTTCCCGCTGGTCACGACCAAAAAGCTGCACCTGCGGTCGATCATTCACGAGCTG 4241189 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 | |||||||| |||||||||||| ||| |||||| || || ||| ||||| ||| Sbjct 4241188 CTCTGGTTCCTCGCCGGCGACACCAATATCGGGTATCTCAAGGAAAACGGCGTCAAGATC 4241129 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 |||||||| ||||| ||||| | ||||| ||||| || |||||||| | |||||||| Sbjct 4241128 TGGGATGACTGGGCGGATGAGAAGGGCGAGCTTGGTCCGGTCTACGGATACCAGTGGCG 4241070 >seq562 Length=35438 Score = 170 bits (188), Expect = 3e-37 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| ||||| ||||||||| | || |||||| || ||| | ||| || | Sbjct 12945 GACCGCACCGGTACGGGCACCTTGTCGTGTTTCGGCATGCAACAGCGCTATGATCTTGCC 13004 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 | || |||||||| |||||||| ||||| |||||||||| || ||||| ||||| || Sbjct 13005 GATGGCTTCCCGCTCGTCACCACGAAAAAACTGCACCTGCGCTCCATCATTCACGAGCTT 13064 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 ||||||| || |||||| ||||||||| | || ||||||||||| || ||| Sbjct 13065 CTGTGGTTTTTGTCCGGCGATACCAACATCAAATACCTGAAAGACAATGGTGTTTCGATC 13124 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||| |||||||| |||||| ||||||| ||||| || ||||| ||| | |||||||| Sbjct 13125 TGGGACGAGTGGGCGGATGAAAATGGCGACCTTGGGCCGGTCTATGGTTACCAGTGGCG 13183 >seq5 Length=3486096 Score = 159 bits (176), Expect = 5e-34 Identities = 215/297 (72%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 196014 ATGAAACAGTATTTGGAATTGATGCA-CACCGTGTTGAACGAAGGTCACGAGAAAGCTGA 196072 ||||| |||||||| || ||||||| ||| | | || |||||| | |||| || Sbjct 3432908 ATGAAGCAGTATTTAGATCTGATGCAGCACATTCTCGAT-GAAGGTGTGCATAAAGAAGA 3432966 Query 196073 CCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAA 196132 ||| |||||||| || || || | || || ||||||||||||||||| ||| | Sbjct 3432967 CCGAACCGGCACAGGGACGCTCAGCGTGTTTGGCTATCAGATGCGTTTTGATCTGGCTCA 3433026 Query 196133 AGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTT 196192 ||||| || |||||||||| ||||||| || || || ||||| || || || ||| | Sbjct 3433027 GGGGTTTCCATTGGTCACCACTAAAAAGTGCCATCTCCGCTCTATTATTCATGAGCTGCT 3433086 Query 196193 GTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 196252 ||||| || | ||| |||||| ||| || |||| || || ||||| || || Sbjct 3433087 TTGGTTTCTTCAGGGCAGCACCAATATCGCCTACTTGAACGATAATGGCGTCAAGATTTG 3433146 Query 196253 GGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 |||||| |||||| |||||| || || |||||||| || || || |||||||||| Sbjct 3433147 GGATGATTGGGCAACTGAAGAAGGTGAGCTTGGCCCGGTATATGGGGAGCAGTGGCG 3433203 >seq4 Length=3599618 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| || ||||| ||||| |||| | ||||| ||| || | || ||||| Sbjct 201493 GACCGCACGGGCACTGGCACACTCTCCGTCTTCGGTCGCCAGGCCCGCTACGATCTGCGT 201552 Query 196131 AAAGGGTTCCCGCTGG-TCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 | || || || ||| | ||||| || ||| | || || || || ||||||||||| || Sbjct 201553 GAGGGATTTCC-CTGCCTAACCACAAAGAAGCTTCATCTCCGCTCAATCATCCACGAGCT 201611 Query 196190 GTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 196249 | |||||||||| || || |||||||||||| || ||||| || ||| ||||| || Sbjct 201612 GCTGTGGTTCCTCAAAGGTGACACCAACATCACCTACCTGAAGGAAAACGGCGTCACCAT 201671 Query 196250 CTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGG 196297 |||||| || ||||| |||||| | || || || |||||||||||||| Sbjct 201672 CTGGGACGAATGGGCGGATGAAAACGGGGACCTCGGCCCCGTCTACGG 201719 >seq19 Length=1029424 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||||||||| |||||| || | ||||| ||||| ||||| |||||| Sbjct 785611 GACCGTACCGGTGTCGGCACCCGGTCGGTGTTCGGCCGCCAGATCCGTTTCAACCTGCAG 785552 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 |||| || || ||||| |||||||| ||| | |||||||| || || | ||| || Sbjct 785551 GAAGGCTTTCCCCTGGTGACCACCAAGAAGGTCCACCTGCGCAGCATTATTTATGAATTG 785492 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 | ||||| || ||| |||| ||| | | ||| | || || ||| ||| Sbjct 785491 CTCTGGTTTCTCCGGGGCTCCACCGACAACACCTGGCTGCAGGAGCGGAAGGTCTCCATC 785432 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCGT 196310 ||| | ||||||||| || |||| || || || ||| | ||||| |||||||||||| Sbjct 785431 TGGAACGAGTGGGCACTGGAGAATGGTGACCTCGGGCCCATTTACGGCAAGCAGTGGCGT 785372 >seq60 Length=599436 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/59 (93%), Gaps = 1/59 (2%) Strand=Plus/Plus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAG 4651 |||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||| Sbjct 37002 TTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGGCCCTGGTTCAAATCCAG 37060 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/59 (93%), Gaps = 1/59 (2%) Strand=Plus/Minus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAG 4651 |||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||| Sbjct 90747 TTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGGCCCTGGTTCAAATCCAG 90689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770300151689120